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1WVJ
Biol. Unit 1
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Asym.Unit (55 KB)
Biol.Unit 1 (99 KB)
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(1)
Title
:
EXPLORING THE GLUR2 LIGAND-BINDING CORE IN COMPLEX WITH THE BICYCLIC AMPA ANALOGUE (S)-4-AHCP
Authors
:
B. B. Nielsen, D. S. Pickering, J. R. Greenwood, L. Brehm, M. Gajhede, A. Schousboe, J. S. Kastrup
Date
:
15 Dec 04 (Deposition) - 26 Apr 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Ionotropic Glutamate Receptor Glur2, Ligand-Binding Core, Complex With Bicyclic Ampa Analogue, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. B. Nielsen, D. S. Pickering, J. R. Greenwood, L. Brehm, M. Gajhede, A. Schousboe, J. S. Kastrup
Exploring The Glur2 Ligand-Binding Core In Complex With The Bicyclical Ampa Analogue (S)-4-Ahcp
Febs J. V. 272 1639 2005
(for further references see the
PDB file header
)
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
2a: 3-(3-HYDROXY-7,8-DIHYDRO-6H-CYCLOH... (IBCa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
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No.
Name
Count
Type
Full Name
1
GOL
6
Ligand/Ion
GLYCEROL
2
IBC
2
Ligand/Ion
3-(3-HYDROXY-7,8-DIHYDRO-6H-CYCLOHEPTA[D]ISOXAZOL-4-YL)-L-ALANINE
3
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:60 , ALA A:63 , ASN A:72 , SER A:140 , HOH A:3119 , HOH A:3124
BINDING SITE FOR RESIDUE SO4 A 2001
2
AC2
SOFTWARE
TYR A:80 , LYS A:116 , LYS A:185 , HOH A:3043 , HOH A:3291
BINDING SITE FOR RESIDUE SO4 A 2002
3
AC3
SOFTWARE
GLU A:13 , TYR A:61 , PRO A:89 , LEU A:90 , THR A:91 , ARG A:96 , GLY A:141 , SER A:142 , THR A:143 , THR A:174 , LEU A:192 , GLU A:193 , MET A:196 , TYR A:220 , HOH A:3004 , HOH A:3005
BINDING SITE FOR RESIDUE IBC A 1001
4
AC4
SOFTWARE
SER A:108 , LEU A:109 , GLY A:110 , SER A:194 , THR A:195 , GLU A:198 , LYS A:210 , ASN A:214 , HOH A:3293
BINDING SITE FOR RESIDUE GOL A 3001
5
AC5
SOFTWARE
TRP A:71 , VAL A:79 , GLY A:118 , HOH A:3072 , HOH A:3094 , HOH A:3259
BINDING SITE FOR RESIDUE GOL A 3002
6
AC6
SOFTWARE
HIS A:46 , ARG A:172 , LYS A:240 , GLN A:244 , HOH A:3267
BINDING SITE FOR RESIDUE GOL A 3003
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1wvja_ (A:)
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)
Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Glutamate receptor ligand binding core
(127)
Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
(115)
1a
d1wvja_
A:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1wvjA01 (A:1-109,A:219-262)
1b: CATH_1wvjA02 (A:110-218)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Norway rat (Rattus norvegicus)
(84)
1a
1wvjA01
A:1-109,A:219-262
1b
1wvjA02
A:110-218
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Lig_chan_1wvjA01 (A:119-262)
2a: PFAM_Lig_chan_Glu_bd_1wvjA02 (A:15-80)
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Clan
:
Ion_channel
(150)
Family
:
Lig_chan
(109)
Rattus norvegicus (Rat)
(101)
1a
Lig_chan-1wvjA01
A:119-262
Clan
:
PBP
(391)
Family
:
Lig_chan-Glu_bd
(91)
Rattus norvegicus (Rat)
(86)
2a
Lig_chan-Glu_bd-1wvjA02
A:15-80
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