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1WUM
Asym. Unit
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Asym.Unit (37 KB)
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(1)
Title
:
COMPLEX STRUCTURE OF PCAF BROMODOMAIN WITH SMALL CHEMICAL LIGAND NP2
Authors
:
L. Zeng, J. Li, M. Muller, S. Yan, S. Mujtaba, C. Pan, Z. Wang, M. M. Zhou
Date
:
08 Dec 04 (Deposition) - 16 Aug 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Keywords
:
Bromodomain, Histone-Acetyltransferase, Nmr-Structure, Chemical Ligand, Np2, Np1
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Zeng, J. Li, M. Muller, S. Yan, S. Mujtaba, C. Pan, Z. Wang, M. M. Zhou
Selective Small Molecules Blocking Hiv-1 Tat And Coactivator Pcaf Association
J. Am. Chem. Soc. V. 127 2376 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: N-(3-AMINOPROPYL)-2-NITROBENZENAMI... (NP2a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NP2
1
Ligand/Ion
N-(3-AMINOPROPYL)-2-NITROBENZENAMINE
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:750 , VAL A:752 , GLU A:756 , ALA A:757 , TYR A:802 , ASN A:803 , TYR A:809
BINDING SITE FOR RESIDUE NP2 A 201
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: BROMODOMAIN_2 (A:740-810)
2: BROMODOMAIN_1 (A:745-802)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BROMODOMAIN_2
PS50014
Bromodomain profile.
KAT2B_HUMAN
740-810
1
A:740-810
2
BROMODOMAIN_1
PS00633
Bromodomain signature.
KAT2B_HUMAN
745-802
1
A:745-802
[
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]
Exons
(4, 4)
Info
All Exons
Exon 1.16 (A:715-719)
Exon 1.17b (A:719-740)
Exon 1.18a (A:741-769)
Exon 1.19 (A:769-832)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.15a/1.16
2: Boundary 1.16/1.17b
3: Boundary 1.17b/1.18a
4: Boundary 1.18a/1.19
5: Boundary 1.19/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000263754
1a
ENSE00001189392
chr3:
20081515-20082272
758
KAT2B_HUMAN
1-101
101
0
-
-
1.2
ENST00000263754
2
ENSE00001076225
chr3:
20113825-20113951
127
KAT2B_HUMAN
102-144
43
0
-
-
1.3
ENST00000263754
3
ENSE00001695585
chr3:
20136755-20136900
146
KAT2B_HUMAN
144-192
49
0
-
-
1.4
ENST00000263754
4
ENSE00001076230
chr3:
20141354-20141446
93
KAT2B_HUMAN
193-223
31
0
-
-
1.6
ENST00000263754
6
ENSE00001076222
chr3:
20142779-20142960
182
KAT2B_HUMAN
224-284
61
0
-
-
1.7b
ENST00000263754
7b
ENSE00000755284
chr3:
20153088-20153279
192
KAT2B_HUMAN
284-348
65
0
-
-
1.8a
ENST00000263754
8a
ENSE00000755443
chr3:
20156374-20156480
107
KAT2B_HUMAN
348-384
37
0
-
-
1.9
ENST00000263754
9
ENSE00000755498
chr3:
20161090-20161215
126
KAT2B_HUMAN
384-426
43
0
-
-
1.10b
ENST00000263754
10b
ENSE00000755616
chr3:
20164160-20164296
137
KAT2B_HUMAN
426-471
46
0
-
-
1.11
ENST00000263754
11
ENSE00000755725
chr3:
20167397-20167605
209
KAT2B_HUMAN
472-541
70
0
-
-
1.12a
ENST00000263754
12a
ENSE00001800162
chr3:
20168915-20169041
127
KAT2B_HUMAN
541-583
43
0
-
-
1.13
ENST00000263754
13
ENSE00001076216
chr3:
20178434-20178544
111
KAT2B_HUMAN
584-620
37
0
-
-
1.14
ENST00000263754
14
ENSE00001076226
chr3:
20181713-20181856
144
KAT2B_HUMAN
621-668
48
0
-
-
1.15a
ENST00000263754
15a
ENSE00001076221
chr3:
20187808-20187922
115
KAT2B_HUMAN
669-707
39
0
-
-
1.16
ENST00000263754
16
ENSE00001076235
chr3:
20189455-20189491
37
KAT2B_HUMAN
707-719
13
1
A:715-719
5
1.17b
ENST00000263754
17b
ENSE00001076223
chr3:
20189735-20189798
64
KAT2B_HUMAN
719-740
22
1
A:719-740
22
1.18a
ENST00000263754
18a
ENSE00001076233
chr3:
20189895-20189979
85
KAT2B_HUMAN
741-769
29
1
A:741-769
29
1.19
ENST00000263754
19
ENSE00001272618
chr3:
20193824-20195896
2073
KAT2B_HUMAN
769-832
64
1
A:769-832
64
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1wuma_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Bromodomain
(203)
Family
:
Bromodomain
(34)
Protein domain
:
P300/CAF histone acetyltransferase bromodomain
(8)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d1wuma_
A:
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close SCOP info
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1wumA00 (A:715-832)
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(
)
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Histone Acetyltransferase; Chain A
(22)
Homologous Superfamily
:
Histone Acetyltransferase; Chain A
(22)
Human (Homo sapiens)
(14)
1a
1wumA00
A:715-832
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Bromodomain_1wumA01 (A:732-815)
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Bromodomain]
(56)
Family
:
Bromodomain
(56)
Homo sapiens (Human)
(44)
1a
Bromodomain-1wumA01
A:732-815
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]
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Protein
Nucleic
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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