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1WUA
Asym. Unit
Info
Asym.Unit (298 KB)
Biol.Unit 1 (292 KB)
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(1)
Title
:
THE STRUCTURE OF APLYRONINE A-ACTIN COMPLEX
Authors
:
K. Hirata, S. Muraoka, K. Suenaga, T. Kuroda, K. Kato, H. Tanaka, M. Yamamoto, M. Takata, K. Yamada, H. Kigoshi
Date
:
03 Dec 04 (Deposition) - 14 Feb 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Aplyronine A, Macrolide, Potent Antitumor Effect, Marine Sponge, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Hirata, S. Muraoka, K. Suenaga, T. Kuroda, K. Kato, H. Tanaka, M. Yamamoto, M. Takata, K. Yamada, H. Kigoshi
Structure Basis For Antitumor Effect Of Aplyronine A
J. Mol. Biol. V. 356 945 2006
(for further references see the
PDB file header
)
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: (8R,9R,10R,11R,14S,18S,20S,24S)-24... (AP8a)
2a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
3a: CALCIUM ION (CAa)
4a: 4-METHYL-HISTIDINE (HICa)
View:
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No.
Name
Count
Type
Full Name
1
AP8
1
Ligand/Ion
(8R,9R,10R,11R,14S,18S,20S,24S)-24-{(1R,2S,3R,6R,7R,8R,9S,10E)-8-(ACETYLOXY)-6-[(N,N-DIMETHYLALANYL)OXY]-11-[FORMYL(METHYL)AMINO]-2-HYDROXY-1,3,7,9-TETRAMETHYLUNDEC-10-ENYL}-10-HYDROXY-14,20-DIMETHOXY-9,11,15,18-TETRAMETHYL-2-OXOOXACYCLOTETRACOSA-3,5,15,21-TETRAEN-8-YL N,N,O-TRIMETHYLSERINATE
2
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
3
CA
1
Ligand/Ion
CALCIUM ION
4
HIC
1
Mod. Amino Acid
4-METHYL-HISTIDINE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ATP A:1380 , HOH A:1508 , HOH A:1509 , HOH A:1510 , HOH A:1511
BINDING SITE FOR RESIDUE CA A 1360
2
AC2
SOFTWARE
GLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:158 , VAL A:159 , GLY A:182 , ARG A:210 , LYS A:213 , GLU A:214 , GLY A:301 , GLY A:302 , THR A:303 , MET A:305 , TYR A:306 , CA A:1360 , HOH A:1403 , HOH A:1411 , HOH A:1423 , HOH A:1437 , HOH A:1449 , HOH A:1486 , HOH A:1508 , HOH A:1509 , HOH A:1510 , HOH A:1511 , HOH A:1823
BINDING SITE FOR RESIDUE ATP A 1380
3
AC3
SOFTWARE
TYR A:69 , HIC A:73 , TYR A:133 , TYR A:143 , ALA A:144 , SER A:145 , GLY A:146 , ARG A:147 , GLY A:168 , TYR A:169 , ARG A:183 , GLU A:334 , LEU A:349 , THR A:351 , PHE A:352 , MET A:355 , HOH A:1409 , HOH A:1415 , HOH A:1439 , HOH A:1443 , HOH A:1538 , HOH A:1571 , HOH A:1590 , HOH A:1639 , HOH A:1704 , HOH A:1775 , HOH A:1777 , HOH A:1816 , HOH A:1906
BINDING SITE FOR RESIDUE AP8 A 1400
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ACTINS_1 (A:53-63)
2: ACTINS_ACT_LIKE (A:104-116)
3: ACTINS_2 (A:356-364)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACTS_RABIT
55-65
1
A:53-63
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTS_RABIT
106-118
1
A:104-116
3
ACTINS_2
PS00432
Actins signature 2.
ACTS_RABIT
358-366
1
A:356-364
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1wuaa1 (A:5-146)
1b: SCOP_d1wuaa2 (A:147-371)
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Protein Domains
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(
)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
Actin
(69)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(55)
1a
d1wuaa1
A:5-146
1b
d1wuaa2
A:147-371
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1wuaA01 (A:5-137,A:339-371)
1b: CATH_1wuaA02 (A:138-179,A:272-338)
2a: CATH_1wuaA03 (A:180-271)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Rabbit (Oryctolagus cuniculus)
(44)
1a
1wuaA01
A:5-137,A:339-371
1b
1wuaA02
A:138-179,A:272-338
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Rabbit (Oryctolagus cuniculus)
(44)
2a
1wuaA03
A:180-271
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Actin_1wuaA01 (A:5-371)
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Clan
:
Actin_ATPase
(173)
Family
:
Actin
(70)
Oryctolagus cuniculus (Rabbit)
(47)
1a
Actin-1wuaA01
A:5-371
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Chain A
Asymmetric Unit 1
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Asym.Unit (298 KB)
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