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1WT1
Asym. Unit
Info
Asym.Unit (55 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (99 KB)
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(1)
Title
:
MUTANT ABO(H) BLOOD GROUP GLYCOSYLTRANSFERASE WITH BOUND UDP AND ACCEPTOR
Authors
:
H. J. Lee, C. H. Barry, S. N. Borisova, N. O. L. Seto, R. B. Zheng, A. Blanch S. V. Evans, M. M. Palcic
Date
:
12 Nov 04 (Deposition) - 07 Dec 04 (Release) - 20 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. J. Lee, C. H. Barry, S. N. Borisova, N. O. L. Seto, R. B. Zheng, A. Blancher, S. V. Evans, M. M. Palcic
Structural Basis For The Inactivity Of Human Blood Group O2 Glycosyltransferase
J. Biol. Chem. V. 280 525 2005
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: 2-HEXYLOXY-6-HYDROXYMETHYL-TETRAHY... (BHGa)
2a: ALPHA-L-FUCOSE (FUCa)
3a: MERCURY (II) ION (HGa)
3b: MERCURY (II) ION (HGb)
3c: MERCURY (II) ION (HGc)
3d: MERCURY (II) ION (HGd)
4a: URIDINE-5'-DIPHOSPHATE (UDPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BHG
1
Ligand/Ion
2-HEXYLOXY-6-HYDROXYMETHYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
HG
4
Ligand/Ion
MERCURY (II) ION
4
UDP
1
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
[
close Hetero Component info
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:233 , PHE A:236 , THR A:245 , TYR A:264 , TRP A:300 , GLU A:303 , FUC A:453 , UDP A:475 , HOH A:995 , HOH A:1137
BINDING SITE FOR RESIDUE BHG A 452
2
AC2
SOFTWARE
ARG A:268 , ASP A:326 , LEU A:329 , BHG A:452 , UDP A:475 , HOH A:994 , HOH A:1161
BINDING SITE FOR RESIDUE FUC A 453
3
AC3
SOFTWARE
CYS A:284 , MET A:288
BINDING SITE FOR RESIDUE HG A 401
4
AC4
SOFTWARE
LEU A:280 , CYS A:284
BINDING SITE FOR RESIDUE HG A 402
5
AC5
SOFTWARE
THR A:119 , CYS A:209
BINDING SITE FOR RESIDUE HG A 403
6
AC6
SOFTWARE
CYS A:284 , HIS A:305
BINDING SITE FOR RESIDUE HG A 404
7
AC7
SOFTWARE
TYR A:126 , ASP A:211 , ASP A:213 , ARG A:268 , BHG A:452 , FUC A:453 , HOH A:1024 , HOH A:1030 , HOH A:1057
BINDING SITE FOR RESIDUE UDP A 475
[
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SAPs(SNPs)/Variants
(20, 20)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_019149 (M63H, chain A, )
02: VAR_019150 (P74S, chain A, )
03: VAR_003409 (P156L, chain A, )
04: VAR_019151 (R161H, chain A, )
05: VAR_036738 (T163M, chain A, )
06: VAR_036739 (R198W, chain A, )
07: VAR_019152 (R199C, chain A, )
08: VAR_036740 (M214R, chain A, )
09: VAR_019153 (F216I, chain A, )
10: VAR_036741 (E223D, chain A, )
11: VAR_055227 (G230R, chain A, )
12: VAR_072628 (P234A, chain A, )
13: VAR_003411 (G235S, chain A, )
14: VAR_033540 (P257L, chain A, )
15: VAR_003412 (L266M, chain A, )
16: VAR_003413 (R268A, chain A, )
17: VAR_033541 (R268R, chain A, )
18: VAR_019154 (V277M, chain A, )
19: VAR_036742 (M288R, chain A, )
20: VAR_036743 (D291N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_019149
R
63
H
BGAT_HUMAN
Polymorphism
549446
A
M
63
H
02
UniProt
VAR_019150
P
74
S
BGAT_HUMAN
Polymorphism
512770
A
P
74
S
03
UniProt
VAR_003409
P
156
L
BGAT_HUMAN
Polymorphism
1053878
A
P
156
L
04
UniProt
VAR_019151
R
161
H
BGAT_HUMAN
Polymorphism
8176738
A
R
161
H
05
UniProt
VAR_036738
T
163
M
BGAT_HUMAN
Polymorphism
55756402
A
T
163
M
06
UniProt
VAR_036739
R
198
W
BGAT_HUMAN
Polymorphism
56223957
A
R
198
W
07
UniProt
VAR_019152
R
199
C
BGAT_HUMAN
Polymorphism
8176739
A
R
199
C
08
UniProt
VAR_036740
M
214
R
BGAT_HUMAN
Polymorphism
55827808
A
M
214
R
09
UniProt
VAR_019153
F
216
I
BGAT_HUMAN
Polymorphism
8176740
A
F
216
I
10
UniProt
VAR_036741
E
223
D
BGAT_HUMAN
Polymorphism
---
A
E
223
D
11
UniProt
VAR_055227
G
230
R
BGAT_HUMAN
Unclassified
---
A
G
230
R
12
UniProt
VAR_072628
P
234
A
BGAT_HUMAN
Polymorphism
---
A
P
234
A
13
UniProt
VAR_003411
G
235
S
BGAT_HUMAN
Polymorphism
8176743
A
G
235
S
14
UniProt
VAR_033540
P
257
L
BGAT_HUMAN
Polymorphism
8176745
A
P
257
L
15
UniProt
VAR_003412
L
266
M
BGAT_HUMAN
Polymorphism
8176746
A
L
266
M
16
UniProt
VAR_003413
G
268
A
BGAT_HUMAN
Polymorphism
8176747
A
R
268
A
17
UniProt
VAR_033541
G
268
R
BGAT_HUMAN
Polymorphism
8176747
A
R
268
R
18
UniProt
VAR_019154
V
277
M
BGAT_HUMAN
Polymorphism
8176748
A
V
277
M
19
UniProt
VAR_036742
M
288
R
BGAT_HUMAN
Polymorphism
---
A
M
288
R
20
UniProt
VAR_036743
D
291
N
BGAT_HUMAN
Polymorphism
---
A
D
291
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1wt1a_ (A:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
alpha-1,3-galactosyltransferase-like
(125)
Protein domain
:
Glycosyltransferase A catalytic domain
(52)
Human (Homo sapiens) [TaxId: 9606]
(52)
1a
d1wt1a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1wt1A00 (A:63-345)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Human (Homo sapiens)
(73)
1a
1wt1A00
A:63-345
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Glyco_transf_6_1wt1A01 (A:64-345)
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Clans
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(
)
Organisms
(
)
(
)
Clan
:
GT-A
(172)
Family
:
Glyco_transf_6
(55)
Homo sapiens (Human)
(40)
1a
Glyco_transf_6-1wt1A01
A:64-345
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Chain A
Asymmetric Unit 1
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