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1WS2
Asym. Unit
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Asym.Unit (200 KB)
Biol.Unit 1 (194 KB)
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(1)
Title
:
URATE OXIDASE FROM ASPERGILLUS FLAVUS COMPLEXED WITH 5,6-DIAMINOURACIL
Authors
:
P. Retailleau, N. Colloc'H, D. Vivares, F. Bonnete, B. Castro, M. El Hajji, T. Prange
Date
:
29 Oct 04 (Deposition) - 22 Mar 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Oxidoreductase, Uric Acid Degradation, Dimeric Barrel, Tunnel-Shaped Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Retailleau, N. Colloc'H, D. Vivares, F. Bonnete, B. Castro, M. El Hajji, T. Prange
Urate Oxidase From Aspergillus Flavus: New Crystal-Packing Contacts In Relation To The Content Of The Active Site.
Acta Crystallogr. , Sect. D V. 61 218 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: N-ACETYL-SERINE (SACa)
1b: N-ACETYL-SERINE (SACb)
1c: N-ACETYL-SERINE (SACc)
1d: N-ACETYL-SERINE (SACd)
2a: 5,6-DIAMINOPYRIMIDINE-2,4(1H,3H)-D... (URNa)
2b: 5,6-DIAMINOPYRIMIDINE-2,4(1H,3H)-D... (URNb)
2c: 5,6-DIAMINOPYRIMIDINE-2,4(1H,3H)-D... (URNc)
2d: 5,6-DIAMINOPYRIMIDINE-2,4(1H,3H)-D... (URNd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SAC
4
Mod. Amino Acid
N-ACETYL-SERINE
2
URN
4
Ligand/Ion
5,6-DIAMINOPYRIMIDINE-2,4(1H,3H)-DIONE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:159 , ARG A:176 , VAL A:227 , ILE B:54 , ALA B:56 , THR B:57
BINDING SITE FOR RESIDUE URN A 900
2
AC2
SOFTWARE
ILE A:54 , ALA A:56 , THR A:57 , PHE B:159 , ARG B:176 , VAL B:227 , GLN B:228
BINDING SITE FOR RESIDUE URN B 1900
3
AC3
SOFTWARE
PHE C:159 , ARG C:176 , VAL C:227 , GLN C:228 , ALA D:56 , THR D:57 , HOH D:1034
BINDING SITE FOR RESIDUE URN C 2900
4
AC4
SOFTWARE
ILE C:54 , ALA C:56 , THR C:57 , PHE D:159 , ARG D:176 , VAL D:227 , GLN D:228
BINDING SITE FOR RESIDUE URN C 3900
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: URICASE (A:149-176,B:149-176,C:149-176,D:14...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
URICASE
PS00366
Uricase signature.
URIC_ASPFL
150-177
4
A:149-176
B:149-176
C:149-176
D:149-176
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1ws2a1 (A:1-136)
1b: SCOP_d1ws2a2 (A:137-296)
1c: SCOP_d1ws2b1 (B:1-136)
1d: SCOP_d1ws2b2 (B:137-296)
1e: SCOP_d1ws2c1 (C:1-136)
1f: SCOP_d1ws2c2 (C:137-299)
1g: SCOP_d1ws2d1 (D:1-136)
1h: SCOP_d1ws2d2 (D:137-296)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
T-fold
(116)
Superfamily
:
Tetrahydrobiopterin biosynthesis enzymes-like
(113)
Family
:
Urate oxidase (uricase)
(60)
Protein domain
:
Urate oxidase (uricase)
(56)
Aspergillus flavus [TaxId: 5059]
(53)
1a
d1ws2a1
A:1-136
1b
d1ws2a2
A:137-296
1c
d1ws2b1
B:1-136
1d
d1ws2b2
B:137-296
1e
d1ws2c1
C:1-136
1f
d1ws2c2
C:137-299
1g
d1ws2d1
D:1-136
1h
d1ws2d2
D:137-296
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ws2A00 (A:2-296)
1b: CATH_1ws2B00 (B:2-296)
1c: CATH_1ws2D00 (D:2-296)
1d: CATH_1ws2C00 (C:2-299)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Urate Oxidase
(38)
Homologous Superfamily
:
Urate Oxidase;
(38)
Aspergillus flavus. Organism_taxid: 5059.
(14)
1a
1ws2A00
A:2-296
1b
1ws2B00
B:2-296
1c
1ws2D00
D:2-296
1d
1ws2C00
C:2-299
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Uricase_1ws2D01 (D:141-290)
1b: PFAM_Uricase_1ws2D02 (D:141-290)
1c: PFAM_Uricase_1ws2D03 (D:141-290)
1d: PFAM_Uricase_1ws2D04 (D:141-290)
1e: PFAM_Uricase_1ws2D05 (D:141-290)
1f: PFAM_Uricase_1ws2D06 (D:141-290)
1g: PFAM_Uricase_1ws2D07 (D:141-290)
1h: PFAM_Uricase_1ws2D08 (D:141-290)
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Clan
:
THBO-biosyn
(64)
Family
:
Uricase
(35)
Aspergillus flavus
(35)
1a
Uricase-1ws2D01
D:141-290
1b
Uricase-1ws2D02
D:141-290
1c
Uricase-1ws2D03
D:141-290
1d
Uricase-1ws2D04
D:141-290
1e
Uricase-1ws2D05
D:141-290
1f
Uricase-1ws2D06
D:141-290
1g
Uricase-1ws2D07
D:141-290
1h
Uricase-1ws2D08
D:141-290
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