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1WRV
Biol. Unit 2
Info
Asym.Unit (155 KB)
Biol.Unit 1 (149 KB)
Biol.Unit 2 (294 KB)
Biol.Unit 3 (100 KB)
Biol.Unit 4 (100 KB)
Biol.Unit 5 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF T.TH.HB8 BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE
Authors
:
M. Goto, Riken Structural Genomics/Proteomics Initiative (Rsgi
Date
:
27 Oct 04 (Deposition) - 18 Oct 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A,B,C (2x)
Biol. Unit 3: A,C (1x)
Biol. Unit 4: A,C (1x)
Biol. Unit 5: B (2x)
Keywords
:
Hexamer, Plp-Dependent Enzyme, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Goto, I. Miyahara, K. Hirotsu
Crystal Structure Of T. Th. Hb8 Branched-Chain Amino Acid Aminotransferase
To Be Published
[
close entry info
]
Hetero Components
(2, 16)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
2c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
2d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
2e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
3a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
3b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
3c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
MPD
10
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
PLP
6
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:68 , GLU C:173 , ARG C:269 , HOH C:1437
BINDING SITE FOR RESIDUE CL A 420
02
AC2
SOFTWARE
GLU A:173 , ARG B:269 , HOH B:959 , ARG C:68
BINDING SITE FOR RESIDUE CL B 920
03
AC3
SOFTWARE
ARG A:269 , HOH A:1451 , ARG B:68 , GLU B:173
BINDING SITE FOR RESIDUE CL A 1420
04
AC4
SOFTWARE
ARG A:59 , ARG A:148 , LYS A:159 , TYR A:164 , GLU A:193 , GLY A:196 , LEU A:216 , GLY A:218 , ILE A:219 , THR A:220 , GLY A:255 , THR A:256 , MPD A:414 , HOH A:1422 , HOH A:1452
BINDING SITE FOR RESIDUE PLP A 413
05
AC5
SOFTWARE
ARG B:59 , ARG B:148 , LYS B:159 , TYR B:164 , GLU B:193 , GLY B:196 , LEU B:216 , GLY B:218 , ILE B:219 , THR B:220 , GLY B:255 , THR B:256 , MPD B:914 , HOH B:925 , HOH B:943
BINDING SITE FOR RESIDUE PLP B 913
06
AC6
SOFTWARE
ARG C:59 , ARG C:148 , LYS C:159 , TYR C:164 , GLU C:193 , GLY C:196 , LEU C:216 , GLY C:218 , ILE C:219 , THR C:220 , GLY C:255 , THR C:256 , MPD C:1414 , HOH C:1416 , HOH C:1468
BINDING SITE FOR RESIDUE PLP C 1413
07
AC7
SOFTWARE
TYR A:164 , GLY A:196 , ALA A:257 , PLP A:413 , HOH A:1464 , VAL C:109
BINDING SITE FOR RESIDUE MPD A 414
08
AC8
SOFTWARE
LEU B:107 , GLY B:196 , PLP B:913 , MPD B:915 , HOH B:931 , HOH B:1030
BINDING SITE FOR RESIDUE MPD B 914
09
AC9
SOFTWARE
TYR C:164 , GLY C:196 , PLP C:1413 , HOH C:1462
BINDING SITE FOR RESIDUE MPD C 1414
10
BC1
SOFTWARE
ASP A:230 , ARG C:295 , HOH C:1518
BINDING SITE FOR RESIDUE MPD A 415
11
BC2
SOFTWARE
TRP B:124 , TRP B:126 , MPD B:914 , HOH B:921
BINDING SITE FOR RESIDUE MPD B 915
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1wrva_ (A:)
1b: SCOP_d1wrvb_ (B:)
1c: SCOP_d1wrvc_ (C:)
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)
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)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(46)
Superfamily
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(46)
Family
:
automated matches
(13)
Protein domain
:
automated matches
(13)
Thermus thermophilus [TaxId: 274]
(1)
1a
d1wrva_
A:
1b
d1wrvb_
B:
1c
d1wrvc_
C:
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1wrvB01 (B:5-131)
1b: CATH_1wrvA01 (A:5-126)
1c: CATH_1wrvC01 (C:5-126)
2a: CATH_1wrvB02 (B:132-294)
2b: CATH_1wrvA02 (A:135-294)
2c: CATH_1wrvC02 (C:137-294)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
[code=3.30.470.10, no name defined]
(39)
Thermus thermophilus. Organism_taxid: 274.
(1)
1a
1wrvB01
B:5-131
1b
1wrvA01
A:5-126
1c
1wrvC01
C:5-126
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 2
(39)
Homologous Superfamily
:
D-amino Acid Aminotransferase, subunit A, domain 2
(39)
Thermus thermophilus. Organism_taxid: 274.
(1)
2a
1wrvB02
B:132-294
2b
1wrvA02
A:135-294
2c
1wrvC02
C:137-294
[
close CATH info
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Aminotran_4_1wrvC01 (C:51-287)
1b: PFAM_Aminotran_4_1wrvC02 (C:51-287)
1c: PFAM_Aminotran_4_1wrvC03 (C:51-287)
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)
Clan
:
no clan defined [family: Aminotran_4]
(8)
Family
:
Aminotran_4
(8)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(2)
1a
Aminotran_4-1wrvC01
C:51-287
1b
Aminotran_4-1wrvC02
C:51-287
1c
Aminotran_4-1wrvC03
C:51-287
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Asym.Unit (155 KB)
Header - Asym.Unit
Biol.Unit 1 (149 KB)
Header - Biol.Unit 1
Biol.Unit 2 (294 KB)
Header - Biol.Unit 2
Biol.Unit 3 (100 KB)
Header - Biol.Unit 3
Biol.Unit 4 (100 KB)
Header - Biol.Unit 4
Biol.Unit 5 (103 KB)
Header - Biol.Unit 5
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