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Asym. Unit
Info
Asym.Unit (96 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (31 KB)
Biol.Unit 3 (31 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF HUMAN CARDIAC TROPONIN C IN COMPLEX WITH TRIFLUOPERAZINE (MONOCLINIC CRYSTAL FORM)
Authors
:
S. Takeda, T. Igarashi, Y. Oishi, H. Mori
Date
:
20 Oct 04 (Deposition) - 24 Jan 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Ef-Hand, Contractile Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Takeda, T. Igarashi, Y. Oishi, H. Mori
Crystal Structure Of The N-Terminal Domain Of Human Cardiac Troponin C In Complex With Trifluoperazine
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 18)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: 10-[3-(4-METHYL-PIPERAZIN-1-YL)-PR... (TFPa)
2b: 10-[3-(4-METHYL-PIPERAZIN-1-YL)-PR... (TFPb)
2c: 10-[3-(4-METHYL-PIPERAZIN-1-YL)-PR... (TFPc)
2d: 10-[3-(4-METHYL-PIPERAZIN-1-YL)-PR... (TFPd)
2e: 10-[3-(4-METHYL-PIPERAZIN-1-YL)-PR... (TFPe)
2f: 10-[3-(4-METHYL-PIPERAZIN-1-YL)-PR... (TFPf)
2g: 10-[3-(4-METHYL-PIPERAZIN-1-YL)-PR... (TFPg)
2h: 10-[3-(4-METHYL-PIPERAZIN-1-YL)-PR... (TFPh)
2i: 10-[3-(4-METHYL-PIPERAZIN-1-YL)-PR... (TFPi)
2j: 10-[3-(4-METHYL-PIPERAZIN-1-YL)-PR... (TFPj)
2k: 10-[3-(4-METHYL-PIPERAZIN-1-YL)-PR... (TFPk)
2l: 10-[3-(4-METHYL-PIPERAZIN-1-YL)-PR... (TFPl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
6
Ligand/Ion
CALCIUM ION
2
TFP
12
Ligand/Ion
10-[3-(4-METHYL-PIPERAZIN-1-YL)-PROPYL]-2-TRIFLUOROMETHYL-10H-PHENOTHIAZINE
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:65 , ASP A:67 , SER A:69 , THR A:71 , GLU A:76 , HOH A:206
BINDING SITE FOR RESIDUE CA A 101
02
AC2
SOFTWARE
ASP B:65 , ASP B:67 , SER B:69 , THR B:71 , GLU B:76 , HOH B:214
BINDING SITE FOR RESIDUE CA B 102
03
AC3
SOFTWARE
ASP C:65 , ASP C:67 , SER C:69 , THR C:71 , GLU C:76 , HOH C:218
BINDING SITE FOR RESIDUE CA C 103
04
AC4
SOFTWARE
ASP D:65 , ASP D:67 , SER D:69 , THR D:71 , GLU D:76
BINDING SITE FOR RESIDUE CA D 104
05
AC5
SOFTWARE
ASP E:65 , ASP E:67 , SER E:69 , THR E:71 , GLU E:76 , HOH E:215
BINDING SITE FOR RESIDUE CA E 105
06
AC6
SOFTWARE
ASP F:65 , ASP F:67 , SER F:69 , THR F:71 , GLU F:76
BINDING SITE FOR RESIDUE CA F 106
07
AC7
SOFTWARE
MET A:45 , GLN A:50 , GLU A:56 , MET A:60 , MET A:80 , TFP A:204 , GLU B:19 , PHE B:20
BINDING SITE FOR RESIDUE TFP A 202
08
AC8
SOFTWARE
PHE A:27 , LEU A:48 , PHE A:77 , MET A:81 , SER A:84 , TFP A:202 , MET B:85 , TFP B:203
BINDING SITE FOR RESIDUE TFP A 204
09
AC9
SOFTWARE
TFP A:204 , PHE B:27 , LEU B:48 , PHE B:77 , MET B:81 , VAL B:82 , SER B:84 , TFP B:201
BINDING SITE FOR RESIDUE TFP B 203
10
BC1
SOFTWARE
GLU A:15 , GLU A:19 , PHE A:20 , GLN B:50 , GLU B:56 , MET B:80 , MET B:81 , TFP B:203
BINDING SITE FOR RESIDUE TFP B 201
11
BC2
SOFTWARE
MET C:45 , GLN C:50 , GLU C:56 , MET C:60 , MET C:80 , TFP C:208 , GLU D:15 , GLU D:19 , PHE D:20
BINDING SITE FOR RESIDUE TFP C 206
12
BC3
SOFTWARE
PHE C:27 , MET C:81 , SER C:84 , TFP C:206 , TFP D:207
BINDING SITE FOR RESIDUE TFP C 208
13
BC4
SOFTWARE
SER C:84 , TFP C:208 , PHE D:20 , PHE D:27 , LEU D:48 , PHE D:77 , MET D:81 , SER D:84 , TFP D:205
BINDING SITE FOR RESIDUE TFP D 207
14
BC5
SOFTWARE
GLU C:19 , PHE C:20 , ALA C:23 , MET D:45 , GLN D:50 , GLU D:56 , MET D:60 , MET D:80 , MET D:81 , SER D:84 , TFP D:207
BINDING SITE FOR RESIDUE TFP D 205
15
BC6
SOFTWARE
MET E:45 , GLN E:50 , GLU E:56 , MET E:60 , MET E:80 , TFP E:212 , HOH E:216 , GLU F:19 , PHE F:20
BINDING SITE FOR RESIDUE TFP E 210
16
BC7
SOFTWARE
PHE E:27 , PHE E:77 , MET E:81 , SER E:84 , TFP E:210 , TFP F:211
BINDING SITE FOR RESIDUE TFP E 212
17
BC8
SOFTWARE
TFP E:212 , PHE F:20 , PHE F:27 , LEU F:48 , PHE F:77 , MET F:81 , SER F:84 , TFP F:209
BINDING SITE FOR RESIDUE TFP F 211
18
BC9
SOFTWARE
GLU E:19 , PHE E:20 , MET F:45 , GLN F:50 , GLU F:56 , MET F:60 , MET F:80 , MET F:81 , TFP F:211
BINDING SITE FOR RESIDUE TFP F 209
[
close Site info
]
SAPs(SNPs)/Variants
(3, 18)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_063070 (A8V, chain A/B/C/D/E/F, )
2: VAR_019776 (L29Q, chain A/B/C/D/E/F, )
3: VAR_063071 (S84Y, chain A/B/C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_063070
A
8
V
TNNC1_HUMAN
Disease (CMH13)
---
A/B/C/D/E/F
A
8
V
2
UniProt
VAR_019776
L
29
Q
TNNC1_HUMAN
Disease (CMH13)
---
A/B/C/D/E/F
L
29
Q
3
UniProt
VAR_063071
C
84
Y
TNNC1_HUMAN
Disease (CMH13)
---
A/B/C/D/E/F
S
84
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 18)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:33-51,B:33-51,C:33-51,D:33-51,E:...)
2: EF_HAND_1 (A:65-77,B:65-77,C:65-77,D:65-77,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
TNNC1_HUMAN
33-51
52-87
92-127
128-161
12
A:33-51
B:33-51
C:33-51
D:33-51
E:33-51
F:33-51
A:52-85
B:52-85
C:52-85
D:52-83
E:52-85
F:52-83
-
-
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
TNNC1_HUMAN
65-77
105-117
141-153
6
A:65-77
B:65-77
C:65-77
D:65-77
E:65-77
F:65-77
-
-
[
close PROSITE info
]
Exons
(4, 24)
Info
All Exons
Exon 1.1 (A:4-8 | B:3-8 | C:3-8 | D:3-8 | E:...)
Exon 1.2b (A:9-19 | B:9-19 | C:9-19 | D:9-19 ...)
Exon 1.3 (A:19-68 | B:19-68 | C:19-68 | D:19...)
Exon 1.4b (A:68-85 | B:68-85 | C:68-85 | D:68...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2b
3: Boundary 1.2b/1.3
4: Boundary 1.3/1.4b
5: Boundary 1.4b/1.5c
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000232975
1
ENSE00001063786
chr3:
52488086-52488008
79
TNNC1_HUMAN
1-8
8
6
A:4-8
B:3-8
C:3-8
D:3-8
E:3-8
F:3-8
5
6
6
6
6
6
1.2b
ENST00000232975
2b
ENSE00000770833
chr3:
52486529-52486499
31
TNNC1_HUMAN
9-19
11
6
A:9-19
B:9-19
C:9-19
D:9-19
E:9-19
F:9-19
11
11
11
11
11
11
1.3
ENST00000232975
3
ENSE00000770832
chr3:
52486268-52486122
147
TNNC1_HUMAN
19-68
50
6
A:19-68
B:19-68
C:19-68
D:19-68
E:19-68
F:19-68
50
50
50
50
50
50
1.4b
ENST00000232975
4b
ENSE00000770831
chr3:
52485874-52485760
115
TNNC1_HUMAN
68-106
39
6
A:68-85
B:68-85
C:68-85
D:68-84
E:68-85
F:68-84
18
18
18
17
18
17
1.5c
ENST00000232975
5c
ENSE00000770830
chr3:
52485543-52485407
137
TNNC1_HUMAN
106-152
47
0
-
-
1.6
ENST00000232975
6
ENSE00001063787
chr3:
52485322-52485118
205
TNNC1_HUMAN
152-161
10
0
-
-
[
close EXON info
]
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1wrla_ (A:)
1b: SCOP_d1wrlc_ (C:)
1c: SCOP_d1wrld_ (D:)
1d: SCOP_d1wrle_ (E:)
1e: SCOP_d1wrlf_ (F:)
1f: SCOP_d1wrlb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
automated matches
(54)
Human (Homo sapiens) [TaxId: 9606]
(21)
1a
d1wrla_
A:
1b
d1wrlc_
C:
1c
d1wrld_
D:
1d
d1wrle_
E:
1e
d1wrlf_
F:
1f
d1wrlb_
B:
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1wrlB00 (B:3-85)
1b: CATH_1wrlC00 (C:3-85)
1c: CATH_1wrlE00 (E:3-85)
1d: CATH_1wrlA00 (A:4-85)
1e: CATH_1wrlD00 (D:3-84)
1f: CATH_1wrlF00 (F:3-84)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
1a
1wrlB00
B:3-85
1b
1wrlC00
C:3-85
1c
1wrlE00
E:3-85
1d
1wrlA00
A:4-85
1e
1wrlD00
D:3-84
1f
1wrlF00
F:3-84
[
close CATH info
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_EF_hand_6_1wrlF01 (F:32-84)
1b: PFAM_EF_hand_6_1wrlF02 (F:32-84)
1c: PFAM_EF_hand_6_1wrlF03 (F:32-84)
1d: PFAM_EF_hand_6_1wrlF04 (F:32-84)
1e: PFAM_EF_hand_6_1wrlF05 (F:32-84)
1f: PFAM_EF_hand_6_1wrlF06 (F:32-84)
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Clan
:
EF_hand
(270)
Family
:
EF_hand_6
(75)
Homo sapiens (Human)
(34)
1a
EF_hand_6-1wrlF01
F:32-84
1b
EF_hand_6-1wrlF02
F:32-84
1c
EF_hand_6-1wrlF03
F:32-84
1d
EF_hand_6-1wrlF04
F:32-84
1e
EF_hand_6-1wrlF05
F:32-84
1f
EF_hand_6-1wrlF06
F:32-84
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