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1WPP
Asym. Unit
Info
Asym.Unit (113 KB)
Biol.Unit 1 (108 KB)
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(1)
Title
:
STRUCTURE OF STREPTOCOCCUS GORDONII INORGANIC PYROPHOSPHATASE
Authors
:
I. P. Fabrichniy, L. Lehtio, A. Salminen, A. A. Baykov, R. Lahti, A. Gold
Date
:
09 Sep 04 (Deposition) - 23 Nov 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Inorganic Pyrophosphatase, Metal Binding, Inhibition, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
I. P. Fabrichniy, L. Lehtio, A. Salminen, A. B. Zyryanov, A. A. Baykov, R. Lahti, A. Goldman
Structural Studies Of Metal Ions In Family Ii Pyrophosphatases: The Requirement For A Janus Ion
Biochemistry V. 43 14403 2004
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
SO4
6
Ligand/Ion
SULFATE ION
3
ZN
4
Ligand/Ion
ZINC ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:9 , ASP A:13 , ASP A:77 , ZN A:602 , HOH A:807 , HOH A:852
BINDING SITE FOR RESIDUE ZN A 601
02
AC2
SOFTWARE
ASP A:15 , ASP A:77 , HIS A:99 , ASP A:151 , ZN A:601 , HOH A:807
BINDING SITE FOR RESIDUE ZN A 602
03
AC3
SOFTWARE
HIS B:9 , ASP B:13 , ASP B:77 , ZN B:604 , HOH B:902 , HOH B:1007
BINDING SITE FOR RESIDUE ZN B 603
04
AC4
SOFTWARE
ASP B:15 , ASP B:77 , HIS B:99 , ASP B:151 , ZN B:603 , HOH B:902
BINDING SITE FOR RESIDUE ZN B 604
05
AC5
SOFTWARE
ARG A:297 , LYS A:298 , HOH A:816 , HOH A:854 , HOH A:1003 , HOH A:1067
BINDING SITE FOR RESIDUE SO4 A 801
06
AC6
SOFTWARE
ARG B:297 , LYS B:298 , HOH B:945 , HOH B:979
BINDING SITE FOR RESIDUE SO4 B 802
07
AC7
SOFTWARE
GLU A:92 , VAL A:93 , THR A:107 , ALA A:108 , SER A:109 , HOH A:819 , HOH A:830 , HOH A:1001
BINDING SITE FOR RESIDUE SO4 A 803
08
AC8
SOFTWARE
GLU B:92 , VAL B:93 , THR B:107 , ALA B:108 , SER B:109 , HOH B:906 , HOH B:943 , HOH B:1006 , HOH B:1112
BINDING SITE FOR RESIDUE SO4 B 804
09
AC9
SOFTWARE
GLN B:82 , GLN B:83 , LYS B:207 , HOH B:1049
BINDING SITE FOR RESIDUE SO4 B 805
10
BC1
SOFTWARE
GLN A:82 , GLN A:83 , LYS A:207 , HOH A:987 , HOH A:995
BINDING SITE FOR RESIDUE SO4 A 806
11
BC2
SOFTWARE
ARG B:101 , LYS B:298
BINDING SITE FOR RESIDUE CL B 901
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1wppa_ (A:)
1b: SCOP_d1wppb_ (B:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
DHH phosphoesterases
(11)
Superfamily
:
DHH phosphoesterases
(11)
Family
:
Manganese-dependent inorganic pyrophosphatase (family II)
(9)
Protein domain
:
Manganese-dependent inorganic pyrophosphatase (family II)
(8)
Streptococcus gordonii [TaxId: 1302]
(2)
1a
d1wppa_
A:
1b
d1wppb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1wppA01 (A:2-191)
1b: CATH_1wppB01 (B:2-191)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
inorganic pyrophosphatase (n-terminal core)
(10)
Homologous Superfamily
:
inorganic pyrophosphatase (n-terminal core)
(10)
Challis (Streptococcus gordonii str)
(1)
1a
1wppA01
A:2-191
1b
1wppB01
B:2-191
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_DHHA2_1wppB01 (B:183-309)
1b: PFAM_DHHA2_1wppB02 (B:183-309)
2a: PFAM_DHH_1wppB03 (B:2-149)
2b: PFAM_DHH_1wppB04 (B:2-149)
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Clans
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Clan
:
no clan defined [family: DHHA2]
(7)
Family
:
DHHA2
(7)
Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288)
(2)
1a
DHHA2-1wppB01
B:183-309
1b
DHHA2-1wppB02
B:183-309
Clan
:
no clan defined [family: DHH]
(7)
Family
:
DHH
(7)
Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288)
(2)
2a
DHH-1wppB03
B:2-149
2b
DHH-1wppB04
B:2-149
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Asymmetric Unit 1
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