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1WP9
Biol. Unit 3
Info
Asym.Unit (465 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (82 KB)
Biol.Unit 3 (82 KB)
Biol.Unit 4 (81 KB)
Biol.Unit 5 (82 KB)
Biol.Unit 6 (82 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS HEF HELICASE DOMAIN
Authors
:
T. Nishino, K. Komori, D. Tsuchiya, Y. Ishino, K. Morikawa
Date
:
31 Aug 04 (Deposition) - 01 Feb 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Helicase, Atpase, Dna Replication, Dna Repair, Dna Recombination, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Nishino, K. Komori, D. Tsuchiya, Y. Ishino, K. Morikawa
Crystal Structure And Functional Implications Of Pyrococcus Furiosus Hef Helicase Domain Involved In Branched Dna Processing
Structure V. 13 143 2005
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
1e: PHOSPHATE ION (PO4e)
1f: PHOSPHATE ION (PO4f)
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No.
Name
Count
Type
Full Name
1
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(1, 1)
Info
All Sites
1: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
PRO C:31 , THR C:32 , GLY C:33 , LEU C:34 , GLY C:35 , LYS C:36 , THR C:37 , HOH C:499
BINDING SITE FOR RESIDUE PO4 C 495
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1wp9a1 (A:1-200)
1b: SCOP_d1wp9a2 (A:201-486)
1c: SCOP_d1wp9f1 (F:1-200)
1d: SCOP_d1wp9f2 (F:201-487)
1e: SCOP_d1wp9b1 (B:1-200)
1f: SCOP_d1wp9b2 (B:201-487)
1g: SCOP_d1wp9c1 (C:1-200)
1h: SCOP_d1wp9c2 (C:201-487)
1i: SCOP_d1wp9d1 (D:1-200)
1j: SCOP_d1wp9d2 (D:201-486)
1k: SCOP_d1wp9e1 (E:1-200)
1l: SCOP_d1wp9e2 (E:201-487)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Tandem AAA-ATPase domain
(59)
Protein domain
:
putative ATP-dependent RNA helicase PF2015
(1)
Pyrococcus furiosus [TaxId: 2261]
(1)
1a
d1wp9a1
A:1-200
1b
d1wp9a2
A:201-486
1c
d1wp9f1
F:1-200
1d
d1wp9f2
F:201-487
1e
d1wp9b1
B:1-200
1f
d1wp9b2
B:201-487
1g
d1wp9c1
C:1-200
1h
d1wp9c2
C:201-487
1i
d1wp9d1
D:1-200
1j
d1wp9d2
D:201-486
1k
d1wp9e1
E:1-200
1l
d1wp9e2
E:201-487
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1wp9B03 (B:212-341)
1b: CATH_1wp9A03 (A:211-341)
1c: CATH_1wp9C03 (C:211-341)
1d: CATH_1wp9E03 (E:211-341)
1e: CATH_1wp9F03 (F:211-341)
1f: CATH_1wp9D03 (D:211-341)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
phosphoenolpyruvate carboxylase, domain 3
(1)
Homologous Superfamily
:
hef helicase domain
(1)
Pyrococcus furiosus dsm 3638. Organism_taxid: 186497. Strain: dsm 3638.
(1)
1a
1wp9B03
B:212-341
1b
1wp9A03
A:211-341
1c
1wp9C03
C:211-341
1d
1wp9E03
E:211-341
1e
1wp9F03
F:211-341
1f
1wp9D03
D:211-341
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_DEAD_1wp9F01 (F:8-173)
1b: PFAM_DEAD_1wp9F02 (F:8-173)
1c: PFAM_DEAD_1wp9F03 (F:8-173)
1d: PFAM_DEAD_1wp9F04 (F:8-173)
1e: PFAM_DEAD_1wp9F05 (F:8-173)
1f: PFAM_DEAD_1wp9F06 (F:8-173)
2a: PFAM_Helicase_C_1wp9F07 (F:379-464)
2b: PFAM_Helicase_C_1wp9F08 (F:379-464)
2c: PFAM_Helicase_C_1wp9F09 (F:379-464)
2d: PFAM_Helicase_C_1wp9F10 (F:379-464)
2e: PFAM_Helicase_C_1wp9F11 (F:379-464)
2f: PFAM_Helicase_C_1wp9F12 (F:379-464)
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Clan
:
P-loop_NTPase
(1112)
Family
:
DEAD
(41)
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
(5)
1a
DEAD-1wp9F01
F:8-173
1b
DEAD-1wp9F02
F:8-173
1c
DEAD-1wp9F03
F:8-173
1d
DEAD-1wp9F04
F:8-173
1e
DEAD-1wp9F05
F:8-173
1f
DEAD-1wp9F06
F:8-173
Family
:
Helicase_C
(51)
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
(5)
2a
Helicase_C-1wp9F07
F:379-464
2b
Helicase_C-1wp9F08
F:379-464
2c
Helicase_C-1wp9F09
F:379-464
2d
Helicase_C-1wp9F10
F:379-464
2e
Helicase_C-1wp9F11
F:379-464
2f
Helicase_C-1wp9F12
F:379-464
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Asymmetric Unit 1
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Asym.Unit (465 KB)
Header - Asym.Unit
Biol.Unit 1 (82 KB)
Header - Biol.Unit 1
Biol.Unit 2 (82 KB)
Header - Biol.Unit 2
Biol.Unit 3 (82 KB)
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Biol.Unit 4 (81 KB)
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Biol.Unit 5 (82 KB)
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