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1WP6
Asym. Unit
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Asym.Unit (90 KB)
Biol.Unit 1 (86 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MALTOHEXAOSE-PRODUCING AMYLASE FROM ALKALOPHILIC BACILLUS SP.707.
Authors
:
R. Kanai, K. Haga, T. Akiba, K. Yamane, K. Harata
Date
:
31 Aug 04 (Deposition) - 30 Nov 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Alpha-Amylase, Maltohexaose, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Kanai, K. Haga, T. Akiba, K. Yamane, K. Harata
Biochemical And Crystallographic Analyses Of Maltohexaose-Producing Amylase From Alkalophilic Bacillus Sp. 707
Biochemistry V. 43 14047 2004
(for further references see the
PDB file header
)
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: SODIUM ION (NAa)
3a: PHOSPHATE ION (PO4a)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
NA
1
Ligand/Ion
SODIUM ION
3
PO4
1
Ligand/Ion
PHOSPHATE ION
4
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:163 , ALA A:186 , ASP A:188 , ASP A:207 , ASP A:209 , HOH A:794
BINDING SITE FOR RESIDUE CA A 501
2
AC2
SOFTWARE
ASN A:106 , ASP A:199 , ASP A:205 , HIS A:240 , HOH A:637
BINDING SITE FOR RESIDUE CA A 502
3
AC3
SOFTWARE
GLY A:305 , TYR A:307 , HIS A:408 , ASN A:409 , ASP A:432 , HOH A:687
BINDING SITE FOR RESIDUE CA A 503
4
AC4
SOFTWARE
ASP A:163 , ASP A:188 , ASP A:199 , ASP A:205 , ILE A:206
BINDING SITE FOR RESIDUE NA A 504
5
AC5
SOFTWARE
HIS A:321 , PRO A:322 , SER A:323 , HIS A:324 , TRS A:506
BINDING SITE FOR RESIDUE PO4 A 505
6
AC6
SOFTWARE
TRP A:284 , HIS A:324 , PO4 A:505
BINDING SITE FOR RESIDUE TRS A 506
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1wp6a1 (A:399-485)
2a: SCOP_d1wp6a2 (A:5-398)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
alpha-Amylases, C-terminal beta-sheet domain
(272)
Protein domain
:
Bacterial alpha-Amylase
(35)
Bacillus sp. 707 [TaxId: 1416]
(4)
1a
d1wp6a1
A:399-485
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
Bacterial alpha-amylase
(35)
Bacillus sp. 707 [TaxId: 1416]
(4)
2a
d1wp6a2
A:5-398
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_DUF1939_1wp6A01 (A:426-483)
2a: PFAM_Alpha_amylase_1wp6A02 (A:24-380)
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Clans
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(
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
GHD
(106)
Family
:
DUF1939
(7)
Bacillus sp. (strain 707)
(2)
1a
DUF1939-1wp6A01
A:426-483
Clan
:
Glyco_hydro_tim
(488)
Family
:
Alpha-amylase
(138)
Bacillus sp. (strain 707)
(2)
2a
Alpha-amylase-1wp6A02
A:24-380
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