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Getting 'Biological Unit' information from database.
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Asym. Unit
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Asym.Unit (84 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (28 KB)
Biol.Unit 3 (28 KB)
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(1)
Title
:
HUMAN SCO1
Authors
:
J. C. Williams, C. Sue, G. S. Banting, H. Yang, D. M. Glerum, W. A. Hendrickson, E. A. Schon
Date
:
27 Aug 04 (Deposition) - 18 Jan 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Cu-Binding Protein, Mitochondrial Assembly Factor, Redox, Chaperone
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Williams, C. Sue, G. S. Banting, H. Yang, D. M. Glerum, W. A. Hendrickson, E. A. Schon
Crystal Structure Of Human Sco1: Implications For Redox Signaling By A Mitochondrial Cytochrome C Oxidase "Assembly" Protein
J. Biol. Chem. V. 280 15202 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 11)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
View:
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No.
Name
Count
Type
Full Name
1
MSE
11
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_012109 (P174L, chain A/B/C, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_012109
P
174
L
SCO1_HUMAN
Disease (MT-C4D)
---
A/B/C
P
174
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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;
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End label:
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Exons
(4, 12)
Info
All Exons
Exon 1.3b (A:138-188 | B:137-188 (gaps) | C:1...)
Exon 1.4 (A:188-219 | B:188-219 | C:188-219)
Exon 1.5 (A:219-257 | B:219-257 | C:219-257)
Exon 1.6b (A:258-297 | B:258-297 | C:258-297)
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All Exon Boundaries
1: Boundary 1.2/1.3b
2: Boundary 1.3b/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6b
5: Boundary 1.6b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000255390
1a
ENSE00001523689
chr17:
10600885-10600552
334
SCO1_HUMAN
1-91
91
0
-
-
1.2
ENST00000255390
2
ENSE00000907744
chr17:
10599148-10599058
91
SCO1_HUMAN
92-122
31
0
-
-
1.3b
ENST00000255390
3b
ENSE00000907743
chr17:
10596278-10596081
198
SCO1_HUMAN
122-188
67
3
A:138-188
B:137-188 (gaps)
C:137-188 (gaps)
51
53
53
1.4
ENST00000255390
4
ENSE00000907742
chr17:
10595281-10595189
93
SCO1_HUMAN
188-219
32
3
A:188-219
B:188-219
C:188-219
32
32
32
1.5
ENST00000255390
5
ENSE00000907741
chr17:
10590159-10590044
116
SCO1_HUMAN
219-257
39
3
A:219-257
B:219-257
C:219-257
39
39
39
1.6b
ENST00000255390
6b
ENSE00001830664
chr17:
10584570-10583654
917
SCO1_HUMAN
258-301
44
3
A:258-297
B:258-297
C:258-297
40
40
40
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SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1wp0b_ (B:)
1b: SCOP_d1wp0c_ (C:)
2a: SCOP_d1wp0a1 (A:138-297)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
automated matches
(46)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d1wp0b_
B:
1b
d1wp0c_
C:
Protein domain
:
Thioredoxin-like protein Sco1 (YpmQ), soluble domain
(6)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d1wp0a1
A:138-297
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1wp0A00 (A:138-297)
1b: CATH_1wp0B00 (B:138-297)
1c: CATH_1wp0C00 (C:138-297)
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)
Organisms
(
)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
1wp0A00
A:138-297
1b
1wp0B00
B:138-297
1c
1wp0C00
C:138-297
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_SCO1_SenC_1wp0C01 (C:139-282)
1b: PFAM_SCO1_SenC_1wp0C02 (C:139-282)
1c: PFAM_SCO1_SenC_1wp0C03 (C:139-282)
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Clan
:
Thioredoxin
(367)
Family
:
SCO1-SenC
(7)
Homo sapiens (Human)
(2)
1a
SCO1-SenC-1wp0C01
C:139-282
1b
SCO1-SenC-1wp0C02
C:139-282
1c
SCO1-SenC-1wp0C03
C:139-282
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (84 KB)
Header - Asym.Unit
Biol.Unit 1 (28 KB)
Header - Biol.Unit 1
Biol.Unit 2 (28 KB)
Header - Biol.Unit 2
Biol.Unit 3 (28 KB)
Header - Biol.Unit 3
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