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1WO8
Asym. Unit
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Asym.Unit (133 KB)
Biol.Unit 1 (128 KB)
Biol.Unit 2 (253 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF METHYLGLYOXAL SYNTHASE FROM THERMUS THERMOPHILUS HB8
Authors
:
M. Sugahara, N. Kunishima, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
12 Aug 04 (Deposition) - 23 Aug 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: A,B,C,D,E,F (2x)
Keywords
:
Methylglyoxal Synthase, Thermus Thermophilus Hb8, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sugahara, N. Kunishima
Crystal Structure Of Methylglyoxal Synthase From Thermus Thermophilus Hb8
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 7)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:13 , THR A:35 , THR A:37 , THR A:38 , SER A:55 , GLY A:56 , HOH A:1061 , HOH A:1073 , HOH A:1143
BINDING SITE FOR RESIDUE SO4 A 1001
2
AC2
SOFTWARE
LYS B:13 , THR B:35 , GLY B:36 , THR B:37 , THR B:38 , SER B:55 , GLY B:56 , HOH B:1066 , HOH B:1083 , HOH B:1118
BINDING SITE FOR RESIDUE SO4 B 1002
3
AC3
SOFTWARE
LYS C:13 , THR C:35 , THR C:37 , THR C:38 , SER C:55 , GLY C:56 , HOH C:1021 , HOH C:1062 , HOH C:1099
BINDING SITE FOR RESIDUE SO4 C 1003
4
AC4
SOFTWARE
LYS D:13 , THR D:35 , THR D:37 , THR D:38 , SER D:55 , GLY D:56 , HOH D:1111 , HOH D:1144
BINDING SITE FOR RESIDUE SO4 D 1004
5
AC5
SOFTWARE
LYS E:13 , THR E:35 , THR E:37 , THR E:38 , SER E:55 , GLY E:56 , HOH E:1037 , HOH E:1102
BINDING SITE FOR RESIDUE SO4 E 1005
6
AC6
SOFTWARE
LYS F:13 , THR F:35 , GLY F:36 , THR F:37 , THR F:38 , SER F:55 , GLY F:56 , HOH F:1077 , HOH F:1083
BINDING SITE FOR RESIDUE SO4 F 1006
7
AC7
SOFTWARE
GLN D:43 , ARG D:52 , HOH D:1028 , HOH D:1131
BINDING SITE FOR RESIDUE SO4 D 1007
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: METHYLGLYOXAL_SYNTH (A:55-63,B:55-63,C:55-63,D:55-63,E:...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
METHYLGLYOXAL_SYNTH
PS01335
Methylglyoxal synthase active site.
MGSA_THET8
55-63
6
A:55-63
B:55-63
C:55-63
D:55-63
E:55-63
F:55-63
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1wo8a1 (A:1-126)
1b: SCOP_d1wo8b_ (B:)
1c: SCOP_d1wo8c_ (C:)
1d: SCOP_d1wo8d_ (D:)
1e: SCOP_d1wo8e_ (E:)
1f: SCOP_d1wo8f_ (F:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Methylglyoxal synthase-like
(31)
Superfamily
:
Methylglyoxal synthase-like
(31)
Family
:
Methylglyoxal synthase, MgsA
(9)
Protein domain
:
Methylglyoxal synthase, MgsA
(7)
Thermus thermophilus [TaxId: 274]
(1)
1a
d1wo8a1
A:1-126
1b
d1wo8b_
B:
1c
d1wo8c_
C:
1d
d1wo8d_
D:
1e
d1wo8e_
E:
1f
d1wo8f_
F:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1wo8A00 (A:1-126)
1b: CATH_1wo8B00 (B:1-123)
1c: CATH_1wo8C00 (C:1-123)
1d: CATH_1wo8D00 (D:1-123)
1e: CATH_1wo8F00 (F:1-123)
1f: CATH_1wo8E00 (E:2-123)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1380, no name defined]
(29)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8 / atcc 27634 / dsm 579.
(1)
1a
1wo8A00
A:1-126
1b
1wo8B00
B:1-123
1c
1wo8C00
C:1-123
1d
1wo8D00
D:1-123
1e
1wo8F00
F:1-123
1f
1wo8E00
E:2-123
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_MGS_1wo8F01 (F:15-108)
1b: PFAM_MGS_1wo8F02 (F:15-108)
1c: PFAM_MGS_1wo8F03 (F:15-108)
1d: PFAM_MGS_1wo8F04 (F:15-108)
1e: PFAM_MGS_1wo8F05 (F:15-108)
1f: PFAM_MGS_1wo8F06 (F:15-108)
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Clan
:
no clan defined [family: MGS]
(13)
Family
:
MGS
(13)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(1)
1a
MGS-1wo8F01
F:15-108
1b
MGS-1wo8F02
F:15-108
1c
MGS-1wo8F03
F:15-108
1d
MGS-1wo8F04
F:15-108
1e
MGS-1wo8F05
F:15-108
1f
MGS-1wo8F06
F:15-108
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Asym.Unit (133 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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