PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1WO5
Asym. Unit
Info
Asym.Unit (103 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION STRUCTURE OF DESIGNED FUNCTIONAL FINGER 2 (DFF2): DESIGNED MUTANT BASED ON NON-NATIVE CHANCE DOMAIN
Authors
:
B. K. Sharpe, C. K. Liew, J. A. Wilce, M. Crossley, J. M. Matthews, J. P. Mackay
Date
:
12 Aug 04 (Deposition) - 08 Mar 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Zinc Finger, Protein Design, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. K. Sharpe, C. K. Liew, A. H. Kwan, J. A. Wilce, M. Crossley, J. M. Matthews, J. P. Mackay
Assessment Of The Robustness Of A Serendipitous Zinc Binding Fold: Mutagenesis And Protein Grafting
Structure V. 13 257 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:5 , CYS A:10 , HIS A:19 , CYS A:23
BINDING SITE FOR RESIDUE ZN A 26
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(1, 1)
Info
All Exons
Exon 1.4 (A:1-25 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000262367
1a
ENSE00001871332
chr16:
3930722-3929833
890
CBP_HUMAN
1-29
29
0
-
-
1.2
ENST00000262367
2
ENSE00001789080
chr16:
3901010-3900298
713
CBP_HUMAN
29-266
238
0
-
-
1.3
ENST00000262367
3
ENSE00001788865
chr16:
3860780-3860604
177
CBP_HUMAN
267-325
59
0
-
-
1.4
ENST00000262367
4
ENSE00001744566
chr16:
3843627-3843387
241
CBP_HUMAN
326-406
81
1
A:1-25 (gaps)
31
1.5
ENST00000262367
5
ENSE00001693899
chr16:
3842095-3841982
114
CBP_HUMAN
406-444
39
0
-
-
1.6
ENST00000262367
6
ENSE00001692816
chr16:
3832927-3832685
243
CBP_HUMAN
444-525
82
0
-
-
1.7
ENST00000262367
7
ENSE00001608958
chr16:
3831307-3831205
103
CBP_HUMAN
525-559
35
0
-
-
1.8
ENST00000262367
8
ENSE00001732416
chr16:
3830879-3830733
147
CBP_HUMAN
559-608
50
0
-
-
1.9
ENST00000262367
9
ENSE00001656158
chr16:
3828818-3828701
118
CBP_HUMAN
608-647
40
0
-
-
1.10
ENST00000262367
10
ENSE00001678454
chr16:
3828183-3828012
172
CBP_HUMAN
648-705
58
0
-
-
1.11
ENST00000262367
11
ENSE00001615007
chr16:
3827658-3827614
45
CBP_HUMAN
705-720
16
0
-
-
1.12
ENST00000262367
12
ENSE00001733259
chr16:
3824694-3824570
125
CBP_HUMAN
720-761
42
0
-
-
1.13
ENST00000262367
13
ENSE00001638447
chr16:
3823931-3823752
180
CBP_HUMAN
762-821
60
0
-
-
1.14
ENST00000262367
14
ENSE00001594624
chr16:
3820987-3820571
417
CBP_HUMAN
822-960
139
0
-
-
1.15
ENST00000262367
15
ENSE00001625302
chr16:
3819354-3819175
180
CBP_HUMAN
961-1020
60
0
-
-
1.16
ENST00000262367
16
ENSE00001784635
chr16:
3817910-3817721
190
CBP_HUMAN
1021-1084
64
0
-
-
1.17
ENST00000262367
17
ENSE00001709420
chr16:
3808973-3808855
119
CBP_HUMAN
1084-1123
40
0
-
-
1.18
ENST00000262367
18
ENSE00001644140
chr16:
3808049-3807810
240
CBP_HUMAN
1124-1203
80
0
-
-
1.19
ENST00000262367
19
ENSE00001699420
chr16:
3807377-3807289
89
CBP_HUMAN
1204-1233
30
0
-
-
1.20
ENST00000262367
20
ENSE00001592013
chr16:
3801807-3801727
81
CBP_HUMAN
1233-1260
28
0
-
-
1.21
ENST00000262367
21
ENSE00001789918
chr16:
3799684-3799628
57
CBP_HUMAN
1260-1279
20
0
-
-
1.22
ENST00000262367
22
ENSE00001670717
chr16:
3795355-3795278
78
CBP_HUMAN
1279-1305
27
0
-
-
1.23
ENST00000262367
23
ENSE00001684253
chr16:
3794962-3794895
68
CBP_HUMAN
1305-1328
24
0
-
-
1.24
ENST00000262367
24
ENSE00001804031
chr16:
3790550-3790400
151
CBP_HUMAN
1328-1378
51
0
-
-
1.25
ENST00000262367
25
ENSE00001623920
chr16:
3789725-3789579
147
CBP_HUMAN
1378-1427
50
0
-
-
1.26
ENST00000262367
26
ENSE00001698951
chr16:
3788673-3788560
114
CBP_HUMAN
1427-1465
39
0
-
-
1.27
ENST00000262367
27
ENSE00000894975
chr16:
3786816-3786651
166
CBP_HUMAN
1465-1520
56
0
-
-
1.28
ENST00000262367
28
ENSE00000894970
chr16:
3786204-3786037
168
CBP_HUMAN
1521-1576
56
0
-
-
1.29
ENST00000262367
29
ENSE00001062588
chr16:
3781938-3781777
162
CBP_HUMAN
1577-1630
54
0
-
-
1.30
ENST00000262367
30
ENSE00000865712
chr16:
3781474-3781193
282
CBP_HUMAN
1631-1724
94
0
-
-
1.31
ENST00000262367
31
ENSE00001292463
chr16:
3779875-3775055
4821
CBP_HUMAN
1725-2442
718
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_zf_TAZ_1wo5A01 (A:19-23)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: zf-TAZ]
(13)
Family
:
zf-TAZ
(13)
Homo sapiens (Human)
(8)
1a
zf-TAZ-1wo5A01
A:19-23
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (103 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1WO5
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help