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1WNW
Biol. Unit 2
Info
Asym.Unit (226 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (75 KB)
Biol.Unit 3 (74 KB)
Biol.Unit 4 (146 KB)
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(1)
Title
:
D136N MUTANT OF HEME OXYGENASE FROM CORYNEBACTERIUM DIPHTHERIAE (HMUO)
Authors
:
M. Unno, T. Matsui, M. Ikeda-Saito
Date
:
10 Aug 04 (Deposition) - 09 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: B,C (1x)
Keywords
:
Heme, Alpha-Helix, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Matsui, M. Furukawa, M. Unno, T. Tomita, M. Ikeda-Saito
Roles Of Distal Asp In Heme Oxygenase From Corynebacterium Diphtheriae, Hmuo: A Water-Driven Oxygen Activation Mechanism
J. Biol. Chem. V. 280 2981 2005
(for further references see the
PDB file header
)
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2a: IODIDE ION (IODa)
2b: IODIDE ION (IODb)
2c: IODIDE ION (IODc)
2d: IODIDE ION (IODd)
2e: IODIDE ION (IODe)
2f: IODIDE ION (IODf)
2g: IODIDE ION (IODg)
2h: IODIDE ION (IODh)
2i: IODIDE ION (IODi)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
View:
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Label:
No.
Name
Count
Type
Full Name
1
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
IOD
4
Ligand/Ion
IODIDE ION
3
NA
-1
Ligand/Ion
SODIUM ION
4
SO4
5
Ligand/Ion
SULFATE ION
[
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Sites
(11, 11)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: BC2 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC7 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
MET B:29 , HEM B:902 , HOH B:4097
BINDING SITE FOR RESIDUE IOD B 1002
02
AC3
SOFTWARE
ASP B:154
BINDING SITE FOR RESIDUE IOD B 1003
03
AC7
SOFTWARE
ASP B:108 , GLN B:206
BINDING SITE FOR RESIDUE NA B 4001
04
AC8
SOFTWARE
HOH B:4062 , HOH B:4157
BINDING SITE FOR RESIDUE NA B 4002
05
BC2
SOFTWARE
SER B:26 , THR B:27 , HIS B:205 , HOH B:4105
BINDING SITE FOR RESIDUE SO4 B 2003
06
BC3
SOFTWARE
VAL B:82 , ARG B:85 , GLY B:159 , HOH B:4017
BINDING SITE FOR RESIDUE SO4 B 2004
07
BC4
SOFTWARE
LYS B:170 , LYS B:173 , ARG B:177 , HOH B:4078
BINDING SITE FOR RESIDUE SO4 B 2005
08
BC5
SOFTWARE
VAL A:202 , GLY B:165 , ILE B:166 , ALA B:167
BINDING SITE FOR RESIDUE SO4 B 2006
09
BC7
SOFTWARE
ARG B:44 , ARG B:99 , HOH B:4111
BINDING SITE FOR RESIDUE SO4 B 2008
10
CC2
SOFTWARE
HOH B:4035 , HOH B:4053 , HOH C:2059
BINDING SITE FOR RESIDUE SO4 C 2012
11
CC4
SOFTWARE
LYS B:13 , HIS B:20 , ALA B:23 , LEU B:33 , TYR B:130 , VAL B:131 , GLY B:135 , SER B:138 , ARG B:177 , PHE B:201 , ASN B:204 , PHE B:208 , IOD B:1002 , HOH B:4010 , HOH B:4078 , HOH B:4159
BINDING SITE FOR RESIDUE HEM B 902
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HEME_OXYGENASE (B:125-135)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEME_OXYGENASE
PS00593
Heme oxygenase signature.
HMUO_CORDI
125-135
1
-
B:125-135
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1wnwa_ (A:)
1b: SCOP_d1wnwb_ (B:)
1c: SCOP_d1wnwc_ (C:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme oxygenase-like
(107)
Superfamily
:
Heme oxygenase-like
(107)
Family
:
Eukaryotic type heme oxygenase
(69)
Protein domain
:
Heme oxygenase HmuO
(16)
Corynebacterium diphtheriae [TaxId: 1717]
(16)
1a
d1wnwa_
A:
1b
d1wnwb_
B:
1c
d1wnwc_
C:
[
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1wnwB00 (B:6-215)
1b: CATH_1wnwA00 (A:6-213)
1c: CATH_1wnwC00 (C:7-212)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Heme Oxygenase; Chain A
(84)
Homologous Superfamily
:
Heme Oxygenase; Chain A
(84)
Corynebacterium diphtheriae. Organism_taxid: 1717.
(11)
1a
1wnwB00
B:6-215
1b
1wnwA00
A:6-213
1c
1wnwC00
C:7-212
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (226 KB)
Header - Asym.Unit
Biol.Unit 1 (75 KB)
Header - Biol.Unit 1
Biol.Unit 2 (75 KB)
Header - Biol.Unit 2
Biol.Unit 3 (74 KB)
Header - Biol.Unit 3
Biol.Unit 4 (146 KB)
Header - Biol.Unit 4
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