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1WNB
Biol. Unit 1
Info
Asym.Unit (313 KB)
Biol.Unit 1 (304 KB)
Biol.Unit 2 (304 KB)
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(1)
Title
:
ESCHERICHIA COLI YDCW GENE PRODUCT IS A MEDIUM-CHAIN ALDEHYDE DEHYDROGENASE (COMPLEXED WITH NADH AND BETAINE ALDEHYDE)
Authors
:
A. Gruez, V. Roig-Zamboni, M. Tegoni, C. Cambillau
Date
:
29 Jul 04 (Deposition) - 05 Oct 04 (Release) - 06 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B,C,D (1x)
Keywords
:
Aldehyde Dehydrogenase, Nadh, Flurorescence, Kinetics, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
A. Gruez, V. Roig-Zamboni, S. Grisel, A. Salomoni, C. Valencia, V. Campanacci, M. Tegoni, C. Cambillau
Crystal Structure And Kinetics Identify Escherichia Coli Ydcw Gene Product As A Medium-Chain Aldehyde Dehydrogenase
J. Mol. Biol. V. 343 29 2004
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: BETAINE ALDEHYDE (BTLa)
2a: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIa)
2b: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIb)
2c: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIc)
2d: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAId)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BTL
1
Ligand/Ion
BETAINE ALDEHYDE
2
NAI
4
Ligand/Ion
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:279 , THR B:281 , PHE B:436 , LEU B:438 , HOH B:5217
BINDING SITE FOR RESIDUE BTL B 5001
2
AC2
SOFTWARE
ILE A:145 , ALA A:146 , TRP A:148 , LYS A:172 , PRO A:173 , SER A:174 , GLU A:175 , GLY A:204 , GLY A:208 , ASP A:209 , LEU A:222 , THR A:223 , GLY A:224 , SER A:225 , THR A:228 , HIS A:231 , GLU A:246 , LEU A:247 , GLY A:248 , CYS A:280 , HIS A:327 , ARG A:330 , PHE A:380 , HOH A:1113 , HOH A:1184
BINDING SITE FOR RESIDUE NAI A 1001
3
AC3
SOFTWARE
ILE B:145 , ALA B:146 , PRO B:147 , TRP B:148 , ASN B:149 , LYS B:172 , SER B:174 , GLU B:175 , GLY B:204 , GLY B:208 , ASP B:209 , LEU B:222 , THR B:223 , GLY B:224 , SER B:225 , THR B:228 , HIS B:231 , ILE B:232 , GLU B:246 , GLY B:248 , CYS B:280 , HIS B:327 , GLU B:378 , HOH B:5065 , HOH B:5209
BINDING SITE FOR RESIDUE NAI B 2001
4
AC4
SOFTWARE
ILE C:145 , ALA C:146 , PRO C:147 , TRP C:148 , ASN C:149 , LYS C:172 , SER C:174 , GLU C:175 , GLY C:204 , GLY C:208 , ASP C:209 , THR C:223 , GLY C:224 , SER C:225 , THR C:228 , HIS C:231 , GLY C:248 , CYS C:280 , ARG C:330 , GLU C:378 , PHE C:380 , HOH C:3043 , HOH C:3183
BINDING SITE FOR RESIDUE NAI C 3001
5
AC5
SOFTWARE
ILE D:145 , ALA D:146 , TRP D:148 , LYS D:172 , SER D:174 , GLU D:175 , ARG D:203 , GLY D:204 , GLY D:208 , ASP D:209 , SER D:225 , THR D:228 , HIS D:231 , HOH D:4005 , HOH D:4097 , HOH D:4170
BINDING SITE FOR RESIDUE NAI D 4001
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:245-252,B:245-252,C:245-252,D:24...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
ABDH_ECOLI
245-252
4
A:245-252
B:245-252
C:245-252
D:245-252
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1wnba_ (A:)
1b: SCOP_d1wnbb_ (B:)
1c: SCOP_d1wnbc_ (C:)
1d: SCOP_d1wnbd_ (D:)
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Protein Domains
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
ALDH-like
(76)
Protein domain
:
Putative betaine aldehyde dehydrogenase YdcW
(2)
Escherichia coli [TaxId: 562]
(2)
1a
d1wnba_
A:
1b
d1wnbb_
B:
1c
d1wnbc_
C:
1d
d1wnbd_
D:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1wnbA01 (A:1-248,A:440-474)
1b: CATH_1wnbB01 (B:1-248,B:440-474)
1c: CATH_1wnbC01 (C:1-248,C:440-474)
1d: CATH_1wnbD01 (D:1-248,D:440-474)
2a: CATH_1wnbA02 (A:249-439)
2b: CATH_1wnbB02 (B:249-439)
2c: CATH_1wnbC02 (C:249-439)
2d: CATH_1wnbD02 (D:249-439)
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Organisms
(
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(2)
1a
1wnbA01
A:1-248,A:440-474
1b
1wnbB01
B:1-248,B:440-474
1c
1wnbC01
C:1-248,C:440-474
1d
1wnbD01
D:1-248,D:440-474
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(2)
2a
1wnbA02
A:249-439
2b
1wnbB02
B:249-439
2c
1wnbC02
C:249-439
2d
1wnbD02
D:249-439
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Aldedh_1wnbD01 (D:11-470)
1b: PFAM_Aldedh_1wnbD02 (D:11-470)
1c: PFAM_Aldedh_1wnbD03 (D:11-470)
1d: PFAM_Aldedh_1wnbD04 (D:11-470)
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Clan
:
ALDH-like
(49)
Family
:
Aldedh
(45)
Escherichia coli (strain K12)
(4)
1a
Aldedh-1wnbD01
D:11-470
1b
Aldedh-1wnbD02
D:11-470
1c
Aldedh-1wnbD03
D:11-470
1d
Aldedh-1wnbD04
D:11-470
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Asymmetric Unit 1
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Asym.Unit (313 KB)
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