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1WMR
Asym. Unit
Info
Asym.Unit (195 KB)
Biol.Unit 1 (96 KB)
Biol.Unit 2 (98 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ISOPULLULANASE FROM ASPERGILLUS NIGER ATCC 9642
Authors
:
M. Mizuno, T. Tonozuka, Y. Miyasaka, H. Akeboshi, S. Kamitori, A. Nishi Y. Sakano
Date
:
15 Jul 04 (Deposition) - 19 Jul 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Pullulan, Glycoside Hydrolase Family 49, Glycoprotein, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Mizuno, A. Koide, A. Yamamura, H. Akeboshi, H. Yoshida, S. Kamitori Y. Sakano, A. Nishikawa, T. Tonozuka
Crystal Structure Of Aspergillus Niger Isopullulanase, A Member Of Glycoside Hydrolase Family 49
J. Mol. Biol. V. 376 210 2008
[
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
1k: N-ACETYL-D-GLUCOSAMINE (NAGk)
1l: N-ACETYL-D-GLUCOSAMINE (NAGl)
1m: N-ACETYL-D-GLUCOSAMINE (NAGm)
1n: N-ACETYL-D-GLUCOSAMINE (NAGn)
1o: N-ACETYL-D-GLUCOSAMINE (NAGo)
1p: N-ACETYL-D-GLUCOSAMINE (NAGp)
1q: N-ACETYL-D-GLUCOSAMINE (NAGq)
1r: N-ACETYL-D-GLUCOSAMINE (NAGr)
2a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
2b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
18
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
NDG
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:24 , LEU A:29 , PRO A:221
BINDING SITE FOR RESIDUE NAG A 1000
02
AC2
SOFTWARE
ASN A:94 , ILE A:163 , SER A:164 , GLU A:174 , HOH A:1131 , HOH A:1138 , HOH A:1218 , HOH A:1226 , HOH A:1252
BINDING SITE FOR RESIDUE NAG A 1001
03
AC3
SOFTWARE
ASN A:210 , THR A:211 , ASP A:230 , HOH A:1169 , HOH A:1250 , ASN B:138
BINDING SITE FOR RESIDUE NAG A 1002
04
AC4
SOFTWARE
ASN A:381
BINDING SITE FOR RESIDUE NAG A 1003
05
AC5
SOFTWARE
TYR A:440 , ASN A:448 , THR A:451
BINDING SITE FOR RESIDUE NAG A 1004
06
AC6
SOFTWARE
GLY A:452 , ASN A:453 , ASN A:455 , ASP A:514 , ASN A:516
BINDING SITE FOR RESIDUE NAG A 1005
07
AC7
SOFTWARE
ASN A:409 , LEU A:411 , ASN A:460
BINDING SITE FOR RESIDUE NAG A 1006
08
AC8
SOFTWARE
ASN A:465 , LYS A:490 , ASN A:491
BINDING SITE FOR RESIDUE NAG A 1007
09
AC9
SOFTWARE
ASN A:503 , ASN B:197
BINDING SITE FOR RESIDUE NAG A 1008
10
BC1
SOFTWARE
ASN B:24 , LEU B:29 , PRO B:221 , HOH B:1177 , HOH B:1204
BINDING SITE FOR RESIDUE NDG B 1000
11
BC2
SOFTWARE
ASN B:25 , SER B:26 , GLN B:27 , ASN B:94 , SER B:164 , GLU B:174 , HOH B:1043 , HOH B:1096 , HOH B:1283 , HOH B:1296 , HOH B:1323
BINDING SITE FOR RESIDUE NAG B 1001
12
BC3
SOFTWARE
ASN A:138 , GLN A:139 , ASN B:210 , THR B:211 , ASP B:230 , HOH B:1013 , HOH B:1185
BINDING SITE FOR RESIDUE NAG B 1002
13
BC4
SOFTWARE
PHE A:184 , ASN B:381
BINDING SITE FOR RESIDUE NAG B 1003
14
BC5
SOFTWARE
TYR B:440 , ASN B:448 , THR B:451 , HOH B:1242 , HOH B:1312
BINDING SITE FOR RESIDUE NAG B 1004
15
BC6
SOFTWARE
ASN B:453 , ASN B:455 , ASP B:514 , ASN B:516 , ASN B:517
BINDING SITE FOR RESIDUE NDG B 1005
16
BC7
SOFTWARE
TYR A:147 , ASN B:409 , ASN B:460
BINDING SITE FOR RESIDUE NAG B 1006
17
BC8
SOFTWARE
ASN B:465 , LYS B:490 , ASN B:491 , HOH B:1074
BINDING SITE FOR RESIDUE NAG B 1007
18
BC9
SOFTWARE
HOH A:1178 , ALA B:425 , ASN B:503 , HOH B:1295
BINDING SITE FOR RESIDUE NAG B 1008
19
CC1
SOFTWARE
THR A:258 , GLY A:304 , ASN A:305 , LEU B:54 , ASN B:115 , SER B:118
BINDING SITE FOR RESIDUE NAG B 1009
20
CC2
SOFTWARE
THR A:40 , GLN A:41 , HOH A:1112 , ASN B:305
BINDING SITE FOR RESIDUE NAG B 1010
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1wmrA02 (A:191-564)
1b: CATH_1wmrB02 (B:191-564)
2a: CATH_1wmrA01 (A:19-189)
2b: CATH_1wmrB01 (B:19-189)
View:
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Classes
(
)
(
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(
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
3 Solenoid
(196)
Topology
:
Pectate Lyase C-like
(105)
Homologous Superfamily
:
Single-stranded right-handed beta-helix, Pectin lyase-like
(73)
Aspergillus niger. Organism_taxid: 5061.
(3)
1a
1wmrA02
A:191-564
1b
1wmrB02
B:191-564
Architecture
:
Sandwich
(5577)
Topology
:
Dex49a from penicillium minioluteum complex, domain 1
(5)
Homologous Superfamily
:
Dex49a from penicillium minioluteum complex, domain 1
(5)
Aspergillus niger. Organism_taxid: 5061.
(2)
2a
1wmrA01
A:19-189
2b
1wmrB01
B:19-189
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_49_1wmrB01 (B:20-563)
1b: PFAM_Glyco_hydro_49_1wmrB02 (B:20-563)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Pec_lyase
(42)
Family
:
Glyco_hydro_49
(3)
Aspergillus niger
(3)
1a
Glyco_hydro_49-1wmrB01
B:20-563
1b
Glyco_hydro_49-1wmrB02
B:20-563
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (195 KB)
Header - Asym.Unit
Biol.Unit 1 (96 KB)
Header - Biol.Unit 1
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