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1WMP
Asym. Unit
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Asym.Unit (221 KB)
Biol.Unit 1 (216 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AMINE OXIDASE COMPLEXED WITH COBALT ION
Authors
:
T. Okajima, S. Kishishita, Y. C. Chiu, T. Murakawa, M. Kim, H. Yamaguchi, S. Hirota, S. Kuroda, K. Tanizawa
Date
:
13 Jul 04 (Deposition) - 02 Aug 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase, Copper, Amine Oxidase, Topaquinone, Cobalt, Biogenesis, Intermediate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Okajima, S. Kishishita, Y. C. Chiu, T. Murakawa, M. Kim, H. Yamaguchi, S. Hirota, S. Kuroda, K. Tanizawa
Reinvestigation Of Metal Ion Specificity For Quinone Cofactor Biogenesis In Bacterial Copper Amine Oxidase
Biochemistry V. 44 12041 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
1b: COBALT (II) ION (COb)
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Label:
No.
Name
Count
Type
Full Name
1
CO
2
Ligand/Ion
COBALT (II) ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:382 , HIS A:431 , HIS A:433 , HIS A:592
BINDING SITE FOR RESIDUE CO A 1001
2
AC2
SOFTWARE
TYR B:382 , HIS B:431 , HIS B:433 , HIS B:592
BINDING SITE FOR RESIDUE CO B 1002
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:371-384,B:371-384)
2: COPPER_AMINE_OXID_2 (A:587-600,B:587-600)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
PAOX_ARTGO
371-384
2
A:371-384
B:371-384
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
PAOX_ARTGO
587-600
2
A:587-600
B:587-600
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1wmpa1 (A:212-628)
1b: SCOP_d1wmpb1 (B:212-628)
2a: SCOP_d1wmpa2 (A:9-96)
2b: SCOP_d1wmpa3 (A:97-211)
2c: SCOP_d1wmpb2 (B:9-96)
2d: SCOP_d1wmpb3 (B:97-211)
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Protein Domains
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Supersandwich
(271)
Superfamily
:
Amine oxidase catalytic domain
(65)
Family
:
Amine oxidase catalytic domain
(65)
Protein domain
:
Copper amine oxidase, domain 3
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
1a
d1wmpa1
A:212-628
1b
d1wmpb1
B:212-628
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Amine oxidase N-terminal region
(65)
Family
:
Amine oxidase N-terminal region
(65)
Protein domain
:
Copper amine oxidase, domains 1 and 2
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
2a
d1wmpa2
A:9-96
2b
d1wmpa3
A:97-211
2c
d1wmpb2
B:9-96
2d
d1wmpb3
B:97-211
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1wmpA02 (A:102-203)
1b: CATH_1wmpA01 (A:9-95)
1c: CATH_1wmpB01 (B:9-95)
1d: CATH_1wmpB02 (B:102-203)
2a: CATH_1wmpA03 (A:204-627)
2b: CATH_1wmpB03 (B:204-627)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.40, no name defined]
(77)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
1a
1wmpA02
A:102-203
1b
1wmpA01
A:9-95
1c
1wmpB01
B:9-95
1d
1wmpB02
B:102-203
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
Copper amine oxidase, Domain 3
(74)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
2a
1wmpA03
A:204-627
2b
1wmpB03
B:204-627
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Pfam Domains
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Asym.Unit (221 KB)
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