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Asym. Unit
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Asym.Unit (96 KB)
Biol.Unit 1 (89 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE UNC5H2 DEATH DOMAIN
Authors
:
N. Handa, K. Murayama, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
09 Jul 04 (Deposition) - 09 Jan 05 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Six Helix Bundle, Death Domain, Apoptosis, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Handa, M. Kukimoto-Niino, R. Akasaka, K. Murayama, T. Terada, M. Inoue, T. Yabuki, M. Aoki, E. Seki, T. Matsuda, E. Nunokawa, A. Tanaka, Y. Hayashizaki, T. Kigawa, M. Shirouzu, S. Yokoyama
Structure Of The Unc5H2 Death Domain
Acta Crystallogr. , Sect. D V. 62 1502 2006
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Hetero Components
(3, 34)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
2a: SULFITE ION (SO3a)
2b: SULFITE ION (SO3b)
2c: SULFITE ION (SO3c)
2d: SULFITE ION (SO3d)
2e: SULFITE ION (SO3e)
2f: SULFITE ION (SO3f)
2g: SULFITE ION (SO3g)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
2
SO3
7
Ligand/Ion
SULFITE ION
3
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:4 , HOH A:166 , ARG A:876 , LYS B:932 , GLU B:934 , MSE B:935
BINDING SITE FOR RESIDUE SO3 A 1001
02
AC2
SOFTWARE
ASN D:874 , ARG D:876 , ASN D:878 , LYS D:932
BINDING SITE FOR RESIDUE SO3 D 1002
03
AC3
SOFTWARE
ASN C:874 , ASN C:878
BINDING SITE FOR RESIDUE SO3 C 1003
04
AC4
SOFTWARE
SER C:888 , MSE C:889 , ASP C:890 , ARG C:891
BINDING SITE FOR RESIDUE SO3 C 1004
05
AC5
SOFTWARE
SER E:888 , MSE E:889 , ASP E:890 , ARG E:891
BINDING SITE FOR RESIDUE SO3 E 1005
06
AC6
SOFTWARE
HOH D:54 , SER D:869 , LYS D:932 , GLU D:934
BINDING SITE FOR RESIDUE SO3 D 1006
07
AC7
SOFTWARE
LYS C:865 , HOH E:147 , PRO E:859 , LEU E:860 , SER E:861
BINDING SITE FOR RESIDUE SO3 E 1007
08
AC8
SOFTWARE
TRP E:910 , ARG E:913 , GLN E:914 , SER E:922
BINDING SITE FOR RESIDUE SO4 E 2001
09
AC9
SOFTWARE
TRP F:910 , ARG F:913 , GLN F:914 , SER F:922
BINDING SITE FOR RESIDUE SO4 F 2002
10
BC1
SOFTWARE
TRP C:910 , ARG C:913 , GLN C:914 , SER C:922
BINDING SITE FOR RESIDUE SO4 C 2003
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: DEATH_DOMAIN (A:877-943,B:877-941,C:877-942,D:87...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DEATH_DOMAIN
PS50017
Death domain profile.
UNC5B_MOUSE
877-943
6
A:877-943
B:877-941
C:877-942
D:877-942
E:877-941
F:877-941
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1wmga_ (A:)
1b: SCOP_d1wmgb_ (B:)
1c: SCOP_d1wmgc_ (C:)
1d: SCOP_d1wmgd_ (D:)
1e: SCOP_d1wmge_ (E:)
1f: SCOP_d1wmgf_ (F:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DEATH domain
(37)
Superfamily
:
DEATH domain
(37)
Family
:
DEATH domain, DD
(18)
Protein domain
:
Netrin receptor UNC5B
(1)
Mouse (Mus musculus) [TaxId: 10090]
(1)
1a
d1wmga_
A:
1b
d1wmgb_
B:
1c
d1wmgc_
C:
1d
d1wmgd_
D:
1e
d1wmge_
E:
1f
d1wmgf_
F:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1wmgA00 (A:854-943)
1b: CATH_1wmgC00 (C:854-942)
1c: CATH_1wmgE00 (E:854-941)
1d: CATH_1wmgF00 (F:855-941)
1e: CATH_1wmgD00 (D:854-942)
1f: CATH_1wmgB00 (B:855-941)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Death Domain, Fas
(26)
Homologous Superfamily
:
Death Domain, Fas
(26)
House mouse (Mus musculus)
(2)
1a
1wmgA00
A:854-943
1b
1wmgC00
C:854-942
1c
1wmgE00
E:854-941
1d
1wmgF00
F:855-941
1e
1wmgD00
D:854-942
1f
1wmgB00
B:855-941
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Death_1wmgF01 (F:864-941)
1b: PFAM_Death_1wmgF02 (F:864-941)
1c: PFAM_Death_1wmgF03 (F:864-941)
1d: PFAM_Death_1wmgF04 (F:864-941)
1e: PFAM_Death_1wmgF05 (F:864-941)
1f: PFAM_Death_1wmgF06 (F:864-941)
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Clan
:
Death
(18)
Family
:
Death
(11)
Mus musculus (Mouse)
(3)
1a
Death-1wmgF01
F:864-941
1b
Death-1wmgF02
F:864-941
1c
Death-1wmgF03
F:864-941
1d
Death-1wmgF04
F:864-941
1e
Death-1wmgF05
F:864-941
1f
Death-1wmgF06
F:864-941
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