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1WMA
Asym. Unit
Info
Asym.Unit (120 KB)
Biol.Unit 1 (115 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN CBR1 IN COMPLEX WITH HYDROXY-PP
Authors
:
D. Rauh, R. Bateman, K. M. Shokat
Date
:
06 Jul 04 (Deposition) - 26 Apr 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.24
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Tanaka, R. Bateman, D. Rauh, E. Vaisberg, S. Ramachandani, C. Zhang, K. C. Hansen, A. L. Burlingame, J. K. Trautman, K. M. Shokat, C. L. Adams
An Unbiased Cell Morphology-Based Screen For New, Biologically Active Small Molecules
Plos Biol. V. 3 128 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(5, 12)
Info
All Hetero Components
1a: 3-(4-AMINO-1-TERT-BUTYL-1H-PYRAZOL... (AB3a)
1b: 3-(4-AMINO-1-TERT-BUTYL-1H-PYRAZOL... (AB3b)
2a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
3a: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33a)
4a: 3,6,9,12,15,18,21,24-OCTAOXAHEXACO... (PE5a)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AB3
2
Ligand/Ion
3-(4-AMINO-1-TERT-BUTYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-3-YL)PHENOL
2
NDP
1
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3
P33
1
Ligand/Ion
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
4
PE5
1
Ligand/Ion
3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
5
SO4
7
Ligand/Ion
SULFATE ION
[
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]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:57 , PHE A:58 , HOH A:542 , HOH A:639
BINDING SITE FOR RESIDUE SO4 A 300
02
AC2
SOFTWARE
PHE A:102 , SER A:190 , SER A:191 , ALA A:192 , TYR A:193 , SO4 A:305 , HOH A:424 , HOH A:458 , HOH A:553 , HOH A:559
BINDING SITE FOR RESIDUE SO4 A 301
03
AC3
SOFTWARE
LYS A:216 , GLY A:217 , ASP A:218 , LYS A:219 , HOH A:506 , HOH A:511 , HOH A:761
BINDING SITE FOR RESIDUE SO4 A 302
04
AC4
SOFTWARE
ASP A:64 , LYS A:111 , THR A:163 , ARG A:209 , LYS A:210 , GLU A:213 , HOH A:446 , HOH A:460 , HOH A:677
BINDING SITE FOR RESIDUE SO4 A 303
05
AC5
SOFTWARE
ARG A:41 , ARG A:118 , HOH A:571 , HOH A:656 , HOH A:675 , HOH A:684
BINDING SITE FOR RESIDUE SO4 A 304
06
AC6
SOFTWARE
VAL A:96 , ALA A:97 , ARG A:272 , SO4 A:301 , HOH A:502 , HOH A:553 , HOH A:559 , HOH A:576
BINDING SITE FOR RESIDUE SO4 A 305
07
AC7
SOFTWARE
SER A:2 , GLY A:3 , GLN A:47 , GLN A:50 , LYS A:129 , HOH A:742
BINDING SITE FOR RESIDUE SO4 A 306
08
AC8
SOFTWARE
SER A:139 , MET A:141 , TYR A:193 , GLY A:228 , TRP A:229 , AB3 A:308 , NDP A:309 , PE5 A:310 , HOH A:479
BINDING SITE FOR RESIDUE AB3 A 307
09
AC9
SOFTWARE
ARG A:22 , ARG A:26 , ILE A:140 , ARG A:144 , GLU A:244 , AB3 A:307 , PE5 A:310 , HOH A:484 , HOH A:607 , HOH A:642
BINDING SITE FOR RESIDUE AB3 A 308
10
BC1
SOFTWARE
GLY A:11 , ASN A:13 , LYS A:14 , GLY A:15 , ILE A:16 , ARG A:37 , LEU A:61 , ASP A:62 , ILE A:63 , ASP A:64 , ASN A:89 , ALA A:90 , GLY A:91 , ILE A:92 , VAL A:137 , SER A:138 , TYR A:193 , LYS A:197 , PRO A:227 , GLY A:228 , TRP A:229 , VAL A:230 , THR A:232 , ASP A:233 , MET A:234 , ALA A:235 , AB3 A:307 , HOH A:402 , HOH A:406 , HOH A:407 , HOH A:430 , HOH A:449 , HOH A:481 , HOH A:523 , HOH A:549 , HOH A:661 , HOH A:664 , HOH A:666 , HOH A:721
BINDING SITE FOR RESIDUE NDP A 309
11
BC2
SOFTWARE
ASP A:23 , ALA A:93 , MET A:141 , ARG A:144 , MET A:234 , GLU A:248 , TYR A:252 , AB3 A:307 , AB3 A:308 , HOH A:416 , HOH A:423 , HOH A:466 , HOH A:495
BINDING SITE FOR RESIDUE PE5 A 310
12
BC3
SOFTWARE
ALA A:93 , THR A:122 , LEU A:125 , HIS A:207 , LYS A:210 , LEU A:211 , GLN A:214 , HOH A:623 , HOH A:697 , HOH A:730
BINDING SITE FOR RESIDUE P33 A 311
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_059053 (V87I, chain A, )
2: VAR_031706 (P130S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_059053
V
88
I
CBR1_HUMAN
Polymorphism
1143663
A
V
87
I
2
UniProt
VAR_031706
P
131
S
CBR1_HUMAN
Polymorphism
41557318
A
P
130
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:180-208)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
CBR1_HUMAN
181-209
1
A:180-208
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.1a (A:2-96)
Exon 1.2a (A:96-132)
Exon 1.3c (A:132-276)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.3c
4: Boundary 1.3c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000290349
1a
ENSE00002172104
chr21:
37442239-37442702
464
CBR1_HUMAN
1-97
97
1
A:2-96
95
1.2a
ENST00000290349
2a
ENSE00001044165
chr21:
37443248-37443355
108
CBR1_HUMAN
97-133
37
1
A:96-132
37
1.3c
ENST00000290349
3c
ENSE00001044162
chr21:
37444744-37445464
721
CBR1_HUMAN
133-277
145
1
A:132-276
145
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1wmaa1 (A:2-276)
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(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
(6)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1wmaa1
A:2-276
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1wmaA00 (A:2-276)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1wmaA00
A:2-276
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_adh_short_1wmaA01 (A:5-150)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short
(92)
Homo sapiens (Human)
(21)
1a
adh_short-1wmaA01
A:5-150
[
close Pfam info
]
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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