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1WL4
Biol. Unit 1
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Asym.Unit (150 KB)
Biol.Unit 1 (572 KB)
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(1)
Title
:
HUMAN CYTOSOLIC ACETOACETYL-COA THIOLASE COMPLEXED WITH COA
Authors
:
P. Kursula, T. Fukao, N. Kondo, R. K. Wierenga
Date
:
20 Jun 04 (Deposition) - 01 Mar 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Thiolase Fold, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Kursula, H. Sikkila, T. Fukao, N. Kondo, R. K. Wierenga
High Resolution Crystal Structures Of Human Cytosolic Thiolase (Ct): A Comparison Of The Active Sites Of Human Ct Bacterial Thiolase, And Bacterial Kas I
J. Mol. Biol. V. 347 189 2005
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Hetero Components
(4, 32)
Info
All Hetero Components
1a: COENZYME A (COAa)
2a: S-HYDROXYCYSTEINE (CSOa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
COA
4
Ligand/Ion
COENZYME A
2
CSO
4
Mod. Amino Acid
S-HYDROXYCYSTEINE
3
GOL
12
Ligand/Ion
GLYCEROL
4
SO4
12
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:12 , ALA A:13 , ARG A:44 , LEU A:277 , ASN A:338 , HIS A:368 , HOH A:3022 , HOH A:3060 , HOH A:3090 , HOH A:3118
BINDING SITE FOR RESIDUE SO4 A 3001
2
AC2
SOFTWARE
TYR A:81 , HIS A:156 , GLU A:289 , PRO A:290 , SER A:291 , HOH A:3207 , HOH A:3279 , HOH A:3483 , HOH A:3502
BINDING SITE FOR RESIDUE SO4 A 3002
3
AC3
SOFTWARE
GLU A:215 , VAL A:216 , LYS A:217 , THR A:218 , HOH A:3408 , HOH A:3440 , HOH A:3498
BINDING SITE FOR RESIDUE SO4 A 3003
4
AC4
SOFTWARE
LYS A:136 , LEU A:151 , HIS A:159 , GLN A:186 , ARG A:223 , SER A:226 , MET A:231 , TYR A:237 , PRO A:248 , ALA A:249 , SER A:252 , GLY A:253 , MET A:293 , PHE A:324 , GOL A:2001 , HOH A:3024 , HOH A:3041 , HOH A:3050 , HOH A:3053 , HOH A:3062 , HOH A:3068 , HOH A:3087 , HOH A:3164 , HOH A:3225 , HOH A:3273 , HOH A:3278 , HOH A:3351 , HOH A:3368
BINDING SITE FOR RESIDUE COA A 1001
5
AC5
SOFTWARE
ARG A:223 , HIS A:224 , GLY A:225 , ASN A:227 , ALA A:230 , COA A:1001 , HOH A:3041 , HOH A:3465
BINDING SITE FOR RESIDUE GOL A 2001
6
AC6
SOFTWARE
ASN A:187 , GLU A:190 , ASN A:191 , ASP A:270 , LYS A:271 , HOH A:3402 , HOH A:3495 , HOH A:3507 , HOH A:3546
BINDING SITE FOR RESIDUE GOL A 2002
7
AC7
SOFTWARE
VAL A:75 , GLY A:78 , ILE A:79 , PRO A:80 , LYS A:170
BINDING SITE FOR RESIDUE GOL A 2003
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_019686 (K211R, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019686
K
211
R
THIC_HUMAN
Polymorphism
25683
A
K
211
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: THIOLASE_2 (A:343-359)
2: THIOLASE_3 (A:378-391)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOLASE_2
PS00737
Thiolases signature 2.
THIC_HUMAN
343-359
4
A:343-359
2
THIOLASE_3
PS00099
Thiolases active site.
THIC_HUMAN
378-391
4
A:378-391
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1wl4a1 (A:4-271)
1b: SCOP_d1wl4a2 (A:272-397)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
automated matches
(108)
Protein domain
:
automated matches
(108)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1wl4a1
A:4-271
1b
d1wl4a2
A:272-397
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1wl4A01 (A:4-127,A:197-280)
1b: CATH_1wl4A02 (A:155-196,A:281-394)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Human (Homo sapiens)
(12)
1a
1wl4A01
A:4-127,A:197-280
1b
1wl4A02
A:155-196,A:281-394
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Thiolase_C_1wl4A01 (A:274-396)
2a: PFAM_Thiolase_N_1wl4A02 (A:5-267)
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Clans
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)
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)
Clan
:
Thiolase
(72)
Family
:
Thiolase_C
(23)
Homo sapiens (Human)
(2)
1a
Thiolase_C-1wl4A01
A:274-396
Family
:
Thiolase_N
(23)
Homo sapiens (Human)
(2)
2a
Thiolase_N-1wl4A02
A:5-267
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