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Asym. Unit
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Asym.Unit (646 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE FIRST MBT DOMAIN FROM HUMAN KIAA1798 PROTEIN
Authors
:
T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
29 May 04 (Deposition) - 29 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Mbt Domain, Kiaa1798, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama
Solution Structure Of The First Mbt Domain From Human Kiaa1798 Protein
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MBT (A:8-82|A:90-127|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MBT
PS51079
MBT repeat profile.
LMBL3_HUMAN
232-332
340-439
448-543
2
A:8-82
A:90-127
-
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Exons
(6, 6)
Info
All Exons
Exon 1.12b (A:1-7 (gaps))
Exon 1.14 (A:8-38)
Exon 1.15 (A:39-84)
Exon 1.16b (A:84-114)
Exon 1.17b (A:115-124 (gaps))
Exon 1.18 (A:125-127 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.11b/1.12b
2: Boundary 1.12b/1.13
3: Boundary 1.13/1.14
4: Boundary 1.14/1.15
5: Boundary 1.15/1.16b
6: Boundary 1.16b/1.17b
7: Boundary 1.17b/1.18
8: Boundary 1.18/1.19
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.5c
ENST00000368136
5c
ENSE00002182355
chr6:
130341702-130341813
112
LMBL3_HUMAN
-
0
0
-
-
1.6
ENST00000368136
6
ENSE00001409294
chr6:
130343372-130343450
79
LMBL3_HUMAN
-
0
0
-
-
1.7
ENST00000368136
7
ENSE00001411632
chr6:
130363830-130363946
117
LMBL3_HUMAN
1-34
34
0
-
-
1.8
ENST00000368136
8
ENSE00000975595
chr6:
130370427-130370538
112
LMBL3_HUMAN
35-72
38
0
-
-
1.9b
ENST00000368136
9b
ENSE00001084666
chr6:
130370901-130370975
75
LMBL3_HUMAN
72-97
26
0
-
-
1.10b
ENST00000368136
10b
ENSE00000975596
chr6:
130372394-130372553
160
LMBL3_HUMAN
97-150
54
0
-
-
1.11b
ENST00000368136
11b
ENSE00000975597
chr6:
130374004-130374136
133
LMBL3_HUMAN
150-194
45
0
-
-
1.12b
ENST00000368136
12b
ENSE00000975598
chr6:
130376316-130376400
85
LMBL3_HUMAN
195-223
29
1
A:1-7 (gaps)
19
1.13
ENST00000368136
13
ENSE00002162936
chr6:
130378551-130378642
92
LMBL3_HUMAN
223-253
31
0
-
-
1.14
ENST00000368136
14
ENSE00002186523
chr6:
130381181-130381285
105
LMBL3_HUMAN
254-288
35
1
A:8-38
31
1.15
ENST00000368136
15
ENSE00002186040
chr6:
130387498-130387633
136
LMBL3_HUMAN
289-334
46
1
A:39-84
46
1.16b
ENST00000368136
16b
ENSE00000975602
chr6:
130389475-130389566
92
LMBL3_HUMAN
334-364
31
1
A:84-114
31
1.17b
ENST00000368136
17b
ENSE00000975603
chr6:
130392121-130392272
152
LMBL3_HUMAN
365-415
51
1
A:115-124 (gaps)
21
1.18
ENST00000368136
18
ENSE00002154851
chr6:
130399703-130399779
77
LMBL3_HUMAN
415-441
27
1
A:125-127 (gaps)
9
1.19
ENST00000368136
19
ENSE00002160966
chr6:
130404765-130404850
86
LMBL3_HUMAN
441-469
29
0
-
-
1.20
ENST00000368136
20
ENSE00002177917
chr6:
130407285-130407395
111
LMBL3_HUMAN
470-506
37
0
-
-
1.21b
ENST00000368136
21b
ENSE00000975607
chr6:
130413890-130414004
115
LMBL3_HUMAN
507-545
39
0
-
-
1.22
ENST00000368136
22
ENSE00000975608
chr6:
130415410-130415512
103
LMBL3_HUMAN
545-579
35
0
-
-
1.23
ENST00000368136
23
ENSE00000975609
chr6:
130425571-130425720
150
LMBL3_HUMAN
579-629
51
0
-
-
1.24
ENST00000368136
24
ENSE00000975610
chr6:
130442024-130442103
80
LMBL3_HUMAN
629-656
28
0
-
-
1.25
ENST00000368136
25
ENSE00000975611
chr6:
130454597-130454766
170
LMBL3_HUMAN
656-712
57
0
-
-
1.26
ENST00000368136
26
ENSE00000975612
chr6:
130454988-130455050
63
LMBL3_HUMAN
713-733
21
0
-
-
1.27d
ENST00000368136
27d
ENSE00002176826
chr6:
130460755-130462584
1830
LMBL3_HUMAN
734-780
47
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1wjsa_ (A:)
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Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Tudor/PWWP/MBT
(72)
Family
:
MBT repeat
(8)
Protein domain
:
Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798)
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1wjsa_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1wjsA00 (A:1-127)
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Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.160, no name defined]
(35)
Human (Homo sapiens)
(27)
1a
1wjsA00
A:1-127
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_MBT_1wjsA01 (A:18-90)
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Clan
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Tudor
(88)
Family
:
MBT
(24)
Homo sapiens (Human)
(20)
1a
MBT-1wjsA01
A:18-90
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Asymmetric Unit 1
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