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1WJR
Asym. Unit
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Asym.Unit (674 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE 2ND MBT DOMAIN FROM HUMAN KIAA1617 PROTEIN
Authors
:
T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
29 May 04 (Deposition) - 29 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Mbt Domain, Kiaa1617 Protein, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama
Solution Structure Of The 2Nd Mbt Domain From Human Kiaa1617 Protein
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available in "Model" view)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: MBT (-|-|A:92-126|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MBT
PS51079
MBT repeat profile.
SMBT2_HUMAN
44-144
152-256
266-372
380-477
1
-
-
A:92-126
-
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Exons
(4, 4)
Info
All Exons
Exon 1.8a (A:1-4 (gaps))
Exon 1.9 (A:5-84)
Exon 1.10 (A:84-116)
Exon 1.11 (A:117-127 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.6/1.8a
2: Boundary 1.8a/1.9
3: Boundary 1.9/1.10
4: Boundary 1.10/1.11
5: Boundary 1.11/1.12
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000397167
1a
ENSE00001527591
chr10:
7453450-7453307
144
SMBT2_HUMAN
-
0
0
-
-
1.4
ENST00000397167
4
ENSE00001215204
chr10:
7423911-7423761
151
SMBT2_HUMAN
1-34
34
0
-
-
1.5
ENST00000397167
5
ENSE00000915095
chr10:
7412337-7412243
95
SMBT2_HUMAN
34-65
32
0
-
-
1.6
ENST00000397167
6
ENSE00000915094
chr10:
7409851-7409611
241
SMBT2_HUMAN
66-146
81
0
-
-
1.8a
ENST00000397167
8a
ENSE00001215170
chr10:
7327916-7327828
89
SMBT2_HUMAN
146-175
30
1
A:1-4 (gaps)
12
1.9
ENST00000397167
9
ENSE00000837273
chr10:
7326112-7325866
247
SMBT2_HUMAN
176-258
83
1
A:5-84
80
1.10
ENST00000397167
10
ENSE00000837272
chr10:
7318951-7318854
98
SMBT2_HUMAN
258-290
33
1
A:84-116
33
1.11
ENST00000397167
11
ENSE00000689524
chr10:
7290611-7290510
102
SMBT2_HUMAN
291-324
34
1
A:117-127 (gaps)
32
1.12
ENST00000397167
12
ENSE00000915093
chr10:
7285667-7285520
148
SMBT2_HUMAN
325-374
50
0
-
-
1.13
ENST00000397167
13
ENSE00000837270
chr10:
7269899-7269817
83
SMBT2_HUMAN
374-401
28
0
-
-
1.14
ENST00000397167
14
ENSE00000915092
chr10:
7262499-7262373
127
SMBT2_HUMAN
402-444
43
0
-
-
1.15
ENST00000397167
15
ENSE00000985193
chr10:
7247890-7247777
114
SMBT2_HUMAN
444-482
39
0
-
-
1.16
ENST00000397167
16
ENSE00000985194
chr10:
7244484-7244442
43
SMBT2_HUMAN
482-496
15
0
-
-
1.17
ENST00000397167
17
ENSE00000985195
chr10:
7242446-7242376
71
SMBT2_HUMAN
496-520
25
0
-
-
1.18
ENST00000397167
18
ENSE00000985196
chr10:
7239649-7239510
140
SMBT2_HUMAN
520-566
47
0
-
-
1.19
ENST00000397167
19
ENSE00000985197
chr10:
7230695-7230586
110
SMBT2_HUMAN
567-603
37
0
-
-
1.20
ENST00000397167
20
ENSE00000985198
chr10:
7218127-7217952
176
SMBT2_HUMAN
603-662
60
0
-
-
1.21
ENST00000397167
21
ENSE00000985199
chr10:
7214623-7214457
167
SMBT2_HUMAN
662-717
56
0
-
-
1.22
ENST00000397167
22
ENSE00000985200
chr10:
7214120-7213857
264
SMBT2_HUMAN
718-805
88
0
-
-
1.23
ENST00000397167
23
ENSE00000985201
chr10:
7213018-7212890
129
SMBT2_HUMAN
806-848
43
0
-
-
1.24a
ENST00000397167
24a
ENSE00001527573
chr10:
7205872-7204249
1624
SMBT2_HUMAN
849-894
46
0
-
-
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d1wjra_ (A:)
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Class
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All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Tudor/PWWP/MBT
(72)
Family
:
MBT repeat
(8)
Protein domain
:
Scm-like with four MBT domains protein 2, SFMBT2 (KIAA1617)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1wjra_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1wjrA00 (A:1-127)
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Class
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Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.160, no name defined]
(35)
Human (Homo sapiens)
(27)
1a
1wjrA00
A:1-127
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_MBT_1wjrA01 (A:17-89)
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Tudor
(88)
Family
:
MBT
(24)
Homo sapiens (Human)
(20)
1a
MBT-1wjrA01
A:17-89
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