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Getting 'Exon' information from database.
1WIO
Asym. Unit
Info
Asym.Unit (103 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (51 KB)
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(1)
Title
:
STRUCTURE OF T-CELL SURFACE GLYCOPROTEIN CD4, TETRAGONAL CRYSTAL FORM
Authors
:
H. Wu, P. D. Kwong, W. A. Hendrickson
Date
:
18 Dec 96 (Deposition) - 07 Jul 97 (Release) - 16 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Immunoglobulin Fold, Transmembrane, Glycoprotein, T-Cell, Mhc Lipoprotein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
H. Wu, P. D. Kwong, W. A. Hendrickson
Dimeric Association And Segmental Variability In The Structure Of Human Cd4.
Nature V. 387 527 1997
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_023459 (K166E, chain A/B, )
2: VAR_023460 (F202S, chain A/B, )
3: VAR_003906 (R240W, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_023459
K
191
E
CD4_HUMAN
Polymorphism
28917504
A/B
K
166
E
2
UniProt
VAR_023460
F
227
S
CD4_HUMAN
Polymorphism
11064419
A/B
F
202
S
3
UniProt
VAR_003906
R
265
W
CD4_HUMAN
Polymorphism
28919570
A/B
R
240
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
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End label:
Sorry, no Info available
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Exons
(6, 12)
Info
All Exons
Exon 1.3 (A:1-47 | B:1-47)
Exon 1.4 (A:47-100 | B:47-100)
Exon 1.5 (A:100-178 | B:100-178)
Exon 1.6b (A:178-294 | B:178-294)
Exon 1.7 (A:294-361 | B:294-361)
Exon 1.8 (A:361-363 | B:361-363)
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6b
5: Boundary 1.6b/1.7
6: Boundary 1.7/1.8
7: Boundary 1.8/1.9
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000011653
1
ENSE00001303311
chr12:
6898651-6898828
178
CD4_HUMAN
-
0
0
-
-
1.2
ENST00000011653
2
ENSE00000866954
chr12:
6909238-6909353
116
CD4_HUMAN
1-17
17
0
-
-
1.3
ENST00000011653
3
ENSE00000716042
chr12:
6909473-6909637
165
CD4_HUMAN
17-72
56
2
A:1-47
B:1-47
47
47
1.4
ENST00000011653
4
ENSE00000716044
chr12:
6923308-6923466
159
CD4_HUMAN
72-125
54
2
A:47-100
B:47-100
54
54
1.5
ENST00000011653
5
ENSE00000716046
chr12:
6923925-6924158
234
CD4_HUMAN
125-203
79
2
A:100-178
B:100-178
79
79
1.6b
ENST00000011653
6b
ENSE00000716048
chr12:
6925222-6925569
348
CD4_HUMAN
203-319
117
2
A:178-294
B:178-294
117
117
1.7
ENST00000011653
7
ENSE00000716051
chr12:
6926296-6926496
201
CD4_HUMAN
319-386
68
2
A:294-361
B:294-361
68
68
1.8
ENST00000011653
8
ENSE00000716053
chr12:
6927587-6927708
122
CD4_HUMAN
386-426
41
2
A:361-363
B:361-363
3
3
1.9
ENST00000011653
9
ENSE00000716057
chr12:
6928013-6928080
68
CD4_HUMAN
427-449
23
0
-
-
1.10
ENST00000011653
10
ENSE00001182623
chr12:
6928465-6929976
1512
CD4_HUMAN
449-458
10
0
-
-
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SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1wioa3 (A:98-178)
1b: SCOP_d1wioa4 (A:292-363)
1c: SCOP_d1wiob3 (B:98-178)
1d: SCOP_d1wiob4 (B:292-363)
2a: SCOP_d1wioa1 (A:1-97)
2b: SCOP_d1wioa2 (A:179-291)
2c: SCOP_d1wiob1 (B:1-97)
2d: SCOP_d1wiob2 (B:179-291)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C2 set domains
(47)
Protein domain
:
CD4 C2-set domains
(31)
Human (Homo sapiens) [TaxId: 9606]
(30)
1a
d1wioa3
A:98-178
1b
d1wioa4
A:292-363
1c
d1wiob3
B:98-178
1d
d1wiob4
B:292-363
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
CD4 V-set domains
(31)
Human (Homo sapiens) [TaxId: 9606]
(30)
2a
d1wioa1
A:1-97
2b
d1wioa2
A:179-291
2c
d1wiob1
B:1-97
2d
d1wiob2
B:179-291
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1wioA01 (A:1-98)
1b: CATH_1wioB01 (B:1-98)
1c: CATH_1wioA03 (A:181-291)
1d: CATH_1wioB03 (B:181-291)
1e: CATH_1wioA02 (A:99-180)
1f: CATH_1wioB02 (B:99-180)
1g: CATH_1wioA04 (A:292-363)
1h: CATH_1wioB04 (B:292-363)
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Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1wioA01
A:1-98
1b
1wioB01
B:1-98
1c
1wioA03
A:181-291
1d
1wioB03
B:181-291
1e
1wioA02
A:99-180
1f
1wioB02
B:99-180
1g
1wioA04
A:292-363
1h
1wioB04
B:292-363
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (103 KB)
Header - Asym.Unit
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