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1WI8
Asym. Unit
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Asym.Unit (522 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN OF EUKARYOTIC INITIATION FACTOR 4B
Authors
:
S. Suzuki, Y. Muto, T. Nagata, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
28 May 04 (Deposition) - 28 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Rna Recognition Motif, Rrm, Rna Binding Domain, Rbd, Rnp, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Biosynthetic Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Suzuki, Y. Muto, T. Nagata, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of The Rna Binding Domain Of Eukaryotic Initiation Factor 4B
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RRM (A:96-173)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
IF4B_HUMAN
96-173
1
A:96-173
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Exons
(7, 7)
Info
All Exons
Exon 1.2 (A:81-86)
Exon 1.3b (A:87-120)
Exon 1.4 (A:121-159)
Exon 1.5 (A:160-178)
Exon 1.6 (A:178-178)
Exon 1.7b (A:179-181)
Exon 1.8a (A:182-184)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3b
3: Boundary 1.3b/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7b
7: Boundary 1.7b/1.8a
8: Boundary 1.8a/1.9
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000262056
1
ENSE00001532938
chr12:
53400062-53400280
219
IF4B_HUMAN
1-5
5
0
-
-
1.2
ENST00000262056
2
ENSE00000919949
chr12:
53410257-53410394
138
IF4B_HUMAN
5-51
47
1
A:81-86
6
1.3b
ENST00000262056
3b
ENSE00000838122
chr12:
53412582-53412790
209
IF4B_HUMAN
51-120
70
1
A:87-120
34
1.4
ENST00000262056
4
ENSE00000838123
chr12:
53413694-53413810
117
IF4B_HUMAN
121-159
39
1
A:121-159
39
1.5
ENST00000262056
5
ENSE00000746225
chr12:
53415590-53415644
55
IF4B_HUMAN
160-178
19
1
A:160-178
19
1.6
ENST00000262056
6
ENSE00000746227
chr12:
53416277-53416411
135
IF4B_HUMAN
178-223
46
1
A:178-178
1
1.7b
ENST00000262056
7b
ENSE00000838124
chr12:
53421566-53421703
138
IF4B_HUMAN
223-269
47
1
A:179-181
3
1.8a
ENST00000262056
8a
ENSE00000838125
chr12:
53421799-53421972
174
IF4B_HUMAN
269-327
59
1
A:182-184
3
1.9
ENST00000262056
9
ENSE00000746234
chr12:
53427590-53427818
229
IF4B_HUMAN
327-403
77
0
-
-
1.10a
ENST00000262056
10a
ENSE00000746237
chr12:
53428396-53428493
98
IF4B_HUMAN
403-436
34
0
-
-
1.11
ENST00000262056
11
ENSE00000746239
chr12:
53431193-53431406
214
IF4B_HUMAN
436-507
72
0
-
-
1.12
ENST00000262056
12
ENSE00000746241
chr12:
53432140-53432195
56
IF4B_HUMAN
507-526
20
0
-
-
1.13
ENST00000262056
13
ENSE00000838126
chr12:
53433022-53433127
106
IF4B_HUMAN
526-561
36
0
-
-
1.14
ENST00000262056
14
ENSE00000746245
chr12:
53433414-53433486
73
IF4B_HUMAN
561-585
25
0
-
-
1.15
ENST00000262056
15
ENSE00001309333
chr12:
53433927-53435992
2066
IF4B_HUMAN
586-611
26
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1wi8a_ (A:)
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Protein Domains
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(
)
Organisms
(
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
Eukaryotic translation initiation factor 4B
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1wi8a_
A:
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CATH Domains
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_RRM_1_1wi8A01 (A:98-167)
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Clan
:
RRM
(206)
Family
:
RRM_1
(131)
Homo sapiens (Human)
(94)
1a
RRM_1-1wi8A01
A:98-167
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Chain A
Asymmetric Unit 1
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