PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1WH1
Asym. Unit
Info
Asym.Unit (34 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
SOLUTION STRUCTURE OF THE FOURTH PDZ DOMAIN OF KIAA1095 PROTEIN
Authors
:
X. Qin, K. Saito, T. Kigawa, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
28 May 04 (Deposition) - 28 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Keywords
:
Pdz Domain, Kiaa1095, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Qin, K. Saito, T. Kigawa, F. Hayashi, S. Yokoyama
Solution Structure Of The Fourth Pdz Domain Of Kiaa1095 Protein
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDZ (-|A:22-91)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
PZRN3_HUMAN
249-339
419-488
1
-
A:22-91
[
close PROSITE info
]
Exons
(7, 7)
Info
All Exons
Exon 1.10b (A:1-6 (gaps))
Exon 1.13b (A:7-21)
Exon 1.14c (A:22-54)
Exon 1.15 (A:55-75)
Exon 1.16c (A:76-109)
Exon 1.17b (A:110-118)
Exon 1.18g (A:119-124)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3/1.10b
2: Boundary 1.10b/1.13b
3: Boundary 1.13b/1.14c
4: Boundary 1.14c/1.15
5: Boundary 1.15/1.16c
6: Boundary 1.16c/1.17b
7: Boundary 1.17b/1.18g
8: Boundary 1.18g/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000263666
1a
ENSE00001890354
chr3:
73674091-73673254
838
PZRN3_HUMAN
1-241
241
0
-
-
1.2
ENST00000263666
2
ENSE00001204273
chr3:
73657835-73657749
87
PZRN3_HUMAN
242-270
29
0
-
-
1.3
ENST00000263666
3
ENSE00001204268
chr3:
73651612-73651505
108
PZRN3_HUMAN
271-306
36
0
-
-
1.10b
ENST00000263666
10b
ENSE00001204263
chr3:
73453546-73453299
248
PZRN3_HUMAN
307-389
83
1
A:1-6 (gaps)
22
1.13b
ENST00000263666
13b
ENSE00001351136
chr3:
73450160-73450073
88
PZRN3_HUMAN
389-418
30
1
A:7-21
15
1.14c
ENST00000263666
14c
ENSE00000966855
chr3:
73440267-73440169
99
PZRN3_HUMAN
419-451
33
1
A:22-54
33
1.15
ENST00000263666
15
ENSE00000966856
chr3:
73439029-73438967
63
PZRN3_HUMAN
452-472
21
1
A:55-75
21
1.16c
ENST00000263666
16c
ENSE00000966857
chr3:
73437220-73437119
102
PZRN3_HUMAN
473-506
34
1
A:76-109
34
1.17b
ENST00000263666
17b
ENSE00000966858
chr3:
73434936-73434820
117
PZRN3_HUMAN
507-545
39
1
A:110-118
9
1.18g
ENST00000263666
18g
ENSE00001414010
chr3:
73434081-73431584
2498
PZRN3_HUMAN
546-1066
521
1
A:119-124
6
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1wh1a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
PDZ domain
(180)
Protein domain
:
Hypothetical protein KIAA1095
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1wh1a_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PDZ_1wh1A01 (A:22-104)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PDZ-like
(184)
Family
:
PDZ
(172)
Homo sapiens (Human)
(96)
1a
PDZ-1wh1A01
A:22-104
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (34 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1WH1
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
