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1WGC
Asym. Unit
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Asym.Unit (62 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (30 KB)
Biol.Unit 3 (56 KB)
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(1)
Title
:
2.2 ANGSTROMS RESOLUTION STRUCTURE ANALYSIS OF TWO REFINED N-ACETYLNEURAMINYLLACTOSE-WHEAT GERM AGGLUTININ ISOLECTIN COMPLEXES
Authors
:
C. S. Wright
Date
:
03 Apr 90 (Deposition) - 15 Oct 90 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (2x)
Biol. Unit 2: B (1x)
Biol. Unit 3: B (2x)
Keywords
:
Lectin (Agglutinin)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. S. Wright
2. 2 A Resolution Structure Analysis Of Two Refined N-Acetylneuraminyl-Lactose--Wheat Germ Agglutinin Isolectin Complexes.
J. Mol. Biol. V. 215 635 1990
(for further references see the
PDB file header
)
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
3a: PYROGLUTAMIC ACID (PCAa)
3b: PYROGLUTAMIC ACID (PCAb)
4a: O-SIALIC ACID (SIAa)
4b: O-SIALIC ACID (SIAb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BGC
2
Ligand/Ion
BETA-D-GLUCOSE
2
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
3
PCA
2
Mod. Amino Acid
PYROGLUTAMIC ACID
4
SIA
2
Ligand/Ion
O-SIALIC ACID
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]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:62 , TYR A:64 , TYR A:66 , TYR A:73 , SER A:114 , GLU A:115 , GAL A:302 , HOH A:370 , HOH A:398
BINDING SITE FOR RESIDUE SIA A 301
2
AC2
SOFTWARE
TYR A:66 , SIA A:301 , BGC A:303 , HOH A:416
BINDING SITE FOR RESIDUE GAL A 302
3
AC3
SOFTWARE
LYS A:130 , GAL A:302
BINDING SITE FOR RESIDUE BGC A 303
4
AC4
SOFTWARE
SER B:62 , TYR B:64 , TYR B:66 , GLU B:72 , TYR B:73 , SER B:114 , GLU B:115 , GAL B:302 , HOH B:305 , HOH B:366
BINDING SITE FOR RESIDUE SIA B 301
5
AC5
SOFTWARE
TYR B:66 , SIA B:301 , BGC B:303 , HOH B:366
BINDING SITE FOR RESIDUE GAL B 302
6
AC6
SOFTWARE
LYS B:130 , GAL B:302
BINDING SITE FOR RESIDUE BGC B 303
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 14)
Info
All PROSITE Patterns/Profiles
1: CHIT_BIND_I_2 (-|A:43-85,B:43-85|A:86-128,B:86-12...)
2: CHIT_BIND_I_1 (A:12-31,B:12-31|A:55-74,B:55-74|A:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHIT_BIND_I_2
PS50941
Chitin-binding type-1 domain profile.
AGI1_WHEAT
26-68
69-111
112-154
155-197
6
-
A:43-85
B:43-85
A:86-128
B:86-128
A:129-171
B:129-171
2
CHIT_BIND_I_1
PS00026
Chitin recognition or binding domain signature.
AGI1_WHEAT
38-57
81-100
124-143
167-186
8
A:12-31
B:12-31
A:55-74
B:55-74
A:98-117
B:98-117
A:141-160
B:141-160
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1wgca1 (A:1-52)
1b: SCOP_d1wgca2 (A:53-86)
1c: SCOP_d1wgca3 (A:87-129)
1d: SCOP_d1wgca4 (A:130-171)
1e: SCOP_d1wgcb1 (B:1-52)
1f: SCOP_d1wgcb2 (B:53-86)
1g: SCOP_d1wgcb3 (B:87-129)
1h: SCOP_d1wgcb4 (B:130-171)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
Plant lectins/antimicrobial peptides
(31)
Family
:
Hevein-like agglutinin (lectin) domain
(28)
Protein domain
:
Wheat germ agglutinin (WGA)
(12)
Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]
(12)
1a
d1wgca1
A:1-52
1b
d1wgca2
A:53-86
1c
d1wgca3
A:87-129
1d
d1wgca4
A:130-171
1e
d1wgcb1
B:1-52
1f
d1wgcb2
B:53-86
1g
d1wgcb3
B:87-129
1h
d1wgcb4
B:130-171
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1wgcA04 (A:129-171)
1b: CATH_1wgcA02 (A:43-85)
1c: CATH_1wgcB02 (B:43-85)
1d: CATH_1wgcA03 (A:86-128)
1e: CATH_1wgcB03 (B:86-128)
1f: CATH_1wgcA01 (A:2-42)
1g: CATH_1wgcB01 (B:2-42)
1h: CATH_1wgcB04 (B:129-171)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Wheat Germ Agglutinin (Isolectin 2); domain 1
(140)
Homologous Superfamily
:
[code=3.30.60.10, no name defined]
(23)
Bread wheat (Triticum aestivum)
(10)
1a
1wgcA04
A:129-171
1b
1wgcA02
A:43-85
1c
1wgcB02
B:43-85
1d
1wgcA03
A:86-128
1e
1wgcB03
B:86-128
1f
1wgcA01
A:2-42
1g
1wgcB01
B:2-42
1h
1wgcB04
B:129-171
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Chitin_bind_1_1wgcB01 (B:129-169)
1b: PFAM_Chitin_bind_1_1wgcB02 (B:129-169)
1c: PFAM_Chitin_bind_1_1wgcB03 (B:129-169)
1d: PFAM_Chitin_bind_1_1wgcB04 (B:129-169)
1e: PFAM_Chitin_bind_1_1wgcB05 (B:129-169)
1f: PFAM_Chitin_bind_1_1wgcB06 (B:129-169)
1g: PFAM_Chitin_bind_1_1wgcB07 (B:129-169)
1h: PFAM_Chitin_bind_1_1wgcB08 (B:129-169)
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Clans
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Organisms
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(
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Clan
:
no clan defined [family: Chitin_bind_1]
(17)
Family
:
Chitin_bind_1
(17)
Triticum aestivum (Wheat)
(8)
1a
Chitin_bind_1-1wgcB01
B:129-169
1b
Chitin_bind_1-1wgcB02
B:129-169
1c
Chitin_bind_1-1wgcB03
B:129-169
1d
Chitin_bind_1-1wgcB04
B:129-169
1e
Chitin_bind_1-1wgcB05
B:129-169
1f
Chitin_bind_1-1wgcB06
B:129-169
1g
Chitin_bind_1-1wgcB07
B:129-169
1h
Chitin_bind_1-1wgcB08
B:129-169
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Asym.Unit (62 KB)
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