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1WF1
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Asym.Unit (548 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF RRM DOMAIN IN RNA-BINDING PROTEIN NP_057951
Authors
:
F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
25 May 04 (Deposition) - 25 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Nmr, Structural Genomics, Rrm Domain, Rna Binding Protein, Riken Structural Genomics/Proteomics Initiative, Rsgi
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama
Solution Structure Of Rrm Domain In Rna-Binding Protein Np_057951
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RRM (A:28-99)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
RALY_HUMAN
21-92
1
A:28-99
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Exons
(3, 3)
Info
All Exons
Exon 1.6b (A:8-93)
Exon 1.7b (A:93-109 (gaps))
Exon 1.8 (A:109-110)
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All Exon Boundaries
1: Boundary 1.3/1.6b
2: Boundary 1.6b/1.7b
3: Boundary 1.7b/1.8
4: Boundary 1.8/1.9b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000246194
1c
ENSE00001830112
chr20:
32581528-32581937
410
RALY_HUMAN
-
0
0
-
-
1.3
ENST00000246194
3
ENSE00001048925
chr20:
32619328-32619410
83
RALY_HUMAN
-
0
0
-
-
1.6b
ENST00000246194
6b
ENSE00000860072
chr20:
32659872-32660136
265
RALY_HUMAN
1-86
86
1
A:8-93
86
1.7b
ENST00000246194
7b
ENSE00000860073
chr20:
32661369-32661441
73
RALY_HUMAN
86-110
25
1
A:93-109 (gaps)
25
1.8
ENST00000246194
8
ENSE00000860075
chr20:
32661625-32661672
48
RALY_HUMAN
110-126
17
1
A:109-110
2
1.9b
ENST00000246194
9b
ENSE00000860077
chr20:
32663680-32663846
167
RALY_HUMAN
126-182
57
0
-
-
1.10b
ENST00000246194
10b
ENSE00000860079
chr20:
32664508-32664621
114
RALY_HUMAN
182-220
39
0
-
-
1.11d
ENST00000246194
11d
ENSE00000860080
chr20:
32664834-32665051
218
RALY_HUMAN
220-292
73
0
-
-
1.12
ENST00000246194
12
ENSE00000860083
chr20:
32666311-32666359
49
RALY_HUMAN
293-306
14
0
-
-
1.13b
ENST00000246194
13b
ENSE00001917733
chr20:
32667716-32668077
362
RALY_HUMAN
-
0
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1wf1a_ (A:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
RNA-binding protein Raly (Autoantigen p542)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1wf1a_
A:
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CATH Domains
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_RRM_1_1wf1A01 (A:30-93)
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Clan
:
RRM
(206)
Family
:
RRM_1
(131)
Homo sapiens (Human)
(94)
1a
RRM_1-1wf1A01
A:30-93
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Chain A
Asymmetric Unit 1
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