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1WEQ
Asym. Unit
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Asym.Unit (419 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF PHD DOMAIN IN PHD FINGER PROTEIN 7
Authors
:
F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
25 May 04 (Deposition) - 25 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Nmr, Structural Genomics, Phd Domain, Phd Finger Protein 7, Riken Structural Genomics/Proteomics Initiative, Rsgi, Gene Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama
Solution Structure Of Phd Domain In Phd Finger Protein 7
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
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Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:24 , CYS A:29 , THR A:57 , HIS A:58 , CYS A:61
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:49 , CYS A:52 , CYS A:73 , CYS A:76
BINDING SITE FOR RESIDUE ZN A 401
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(4, 4)
Info
All Exons
Exon 1.7 (A:1-4)
Exon 1.8 (A:5-7)
Exon 1.9 (A:8-42)
Exon 1.10 (A:42-83)
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/1.10
5: Boundary 1.10/1.11b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSMUST00000022459
1a
ENSMUSE00000235231
chr14:
32064404-32063891
514
PHF7_MOUSE
-
0
0
-
-
1.2
ENSMUST00000022459
2
ENSMUSE00000235224
chr14:
32062903-32062794
110
PHF7_MOUSE
1-14
14
0
-
-
1.3
ENSMUST00000022459
3
ENSMUSE00000121852
chr14:
32062233-32062181
53
PHF7_MOUSE
14-32
19
0
-
-
1.4
ENSMUST00000022459
4
ENSMUSE00000121845
chr14:
32061320-32061229
92
PHF7_MOUSE
32-62
31
0
-
-
1.5
ENSMUST00000022459
5
ENSMUSE00000121848
chr14:
32055013-32054912
102
PHF7_MOUSE
63-96
34
0
-
-
1.6
ENSMUST00000022459
6
ENSMUSE00000121847
chr14:
32054169-32054045
125
PHF7_MOUSE
97-138
42
0
-
-
1.7
ENSMUST00000022459
7
ENSMUSE00000121850
chr14:
32053619-32053460
160
PHF7_MOUSE
138-191
54
1
A:1-4
4
1.8
ENSMUST00000022459
8
ENSMUSE00000121849
chr14:
32052923-32052817
107
PHF7_MOUSE
192-227
36
1
A:5-7
3
1.9
ENSMUST00000022459
9
ENSMUSE00000121851
chr14:
32052422-32052306
117
PHF7_MOUSE
227-266
40
1
A:8-42
35
1.10
ENSMUST00000022459
10
ENSMUSE00000235167
chr14:
32051668-32051523
146
PHF7_MOUSE
266-307
42
1
A:42-83
42
1.11b
ENSMUST00000022459
11b
ENSMUSE00000235163
chr14:
32051339-32050882
458
PHF7_MOUSE
-
0
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1weqa_ (A:)
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Protein Domains
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Organisms
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Class
:
Small proteins
(3458)
Fold
:
FYVE/PHD zinc finger
(57)
Superfamily
:
FYVE/PHD zinc finger
(57)
Family
:
PHD domain
(30)
Protein domain
:
PHD finger protein 7 (NYD-SP6)
(1)
Mouse (Mus musculus) [TaxId: 10090]
(1)
1a
d1weqa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1weqA00 (A:1-85)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Herpes Virus-1
(49)
Homologous Superfamily
:
Zinc/RING finger domain, C3HC4 (zinc finger)
(47)
House mouse (Mus musculus)
(6)
1a
1weqA00
A:1-85
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Pfam Domains
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Chain A
Asymmetric Unit 1
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