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1WEJ
Asym. Unit
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Asym.Unit (104 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (99 KB)
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(1)
Title
:
IGG1 FAB FRAGMENT (OF E8 ANTIBODY) COMPLEXED WITH HORSE CYTOCHROME C AT 1.8 A RESOLUTION
Authors
:
S. E. Mylvaganam, Y. Paterson, E. D. Getzoff
Date
:
26 Mar 98 (Deposition) - 09 Dec 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : F,H,L
Biol. Unit 1: F,H,L (1x)
Biol. Unit 2: F,H,L (1x)
Keywords
:
Immunoglobulin, Igg1 Kappa, Fab Fragment, Horse Cytochrome C, Complex (Antibody/Electron Transport)
(Keyword Search:
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)
Reference
:
S. E. Mylvaganam, Y. Paterson, E. D. Getzoff
Structural Basis For The Binding Of An Anti-Cytochrome C Antibody To Its Antigen: Crystal Structures Of Fabe8-Cytochrome C Complex To 1. 8 A Resolution And Fabe8 To 2. 26 A Resolution.
J. Mol. Biol. V. 281 301 1998
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3a: ZINC ION (ZNa)
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Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
ZN
1
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP L:151 , HIS L:189 , HOH L:368
BINDING SITE FOR RESIDUE ZN L 215
2
AC2
SOFTWARE
LYS F:13 , CYS F:14 , GLN F:16 , CYS F:17 , HIS F:18 , THR F:28 , GLY F:29 , PRO F:30 , THR F:40 , GLY F:41 , TYR F:48 , THR F:49 , ASN F:52 , TRP F:59 , TYR F:67 , LEU F:68 , THR F:78 , LYS F:79 , MET F:80 , PHE F:82 , HOH F:208
BINDING SITE FOR RESIDUE HEM F 105
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CYTC (F:1-102)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
CYC_HORSE
2-103
1
F:1-102
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(5, 5)
Info
All SCOP Domains
1a: SCOP_d1wejf_ (F:)
2a: SCOP_d1wejh2 (H:113-223)
3a: SCOP_d1wejl2 (L:108-214)
4a: SCOP_d1wejh1 (H:1-112)
5a: SCOP_d1wejl1 (L:1-107)
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Protein Domains
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)
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Organisms
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)
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)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome c
(308)
Superfamily
:
Cytochrome c
(308)
Family
:
monodomain cytochrome c
(197)
Protein domain
:
Mitochondrial cytochrome c
(81)
Horse (Equus caballus) [TaxId: 9796]
(21)
1a
d1wejf_
F:
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
2a
d1wejh2
H:113-223
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
3a
d1wejl2
L:108-214
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]
(31)
4a
d1wejh1
H:1-112
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(211)
5a
d1wejl1
L:1-107
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CATH Domains
(2, 5)
Info
all CATH domains
1a: CATH_1wejF00 (F:1-104)
2a: CATH_1wejL02 (L:109-211)
2b: CATH_1wejH02 (H:118-216)
2c: CATH_1wejH01 (H:1-117)
2d: CATH_1wejL01 (L:1-108)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
House mouse (Mus musculus)
(2)
1a
1wejF00
F:1-104
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1wejL02
L:109-211
2b
1wejH02
H:118-216
2c
1wejH01
H:1-117
2d
1wejL01
L:1-108
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Cytochrom_C_1wejF01 (F:3-102)
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Clan
:
Cytochrome-c
(108)
Family
:
Cytochrom_C
(54)
Equus caballus (Horse)
(8)
1a
Cytochrom_C-1wejF01
F:3-102
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Asymmetric Unit 1
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Asym.Unit (104 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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