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1WE1
Asym. Unit
Info
Asym.Unit (159 KB)
Biol.Unit 1 (41 KB)
Biol.Unit 2 (41 KB)
Biol.Unit 3 (41 KB)
Biol.Unit 4 (40 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HEME OXYGENASE-1 FROM CYANOBACTERIUM SYNECHOCYSTIS SP. PCC6803 IN COMPLEX WITH HEME
Authors
:
M. Sugishima, C. T. Migita, X. Zhang, T. Yoshida, K. Fukuyama
Date
:
21 May 04 (Deposition) - 21 Dec 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sugishima, C. T. Migita, X. Zhang, T. Yoshida, K. Fukuyama
Crystal Structure Of Heme Oxygenase-1 From Cyanobacterium Synechocystis Sp. Pcc 6803 In Complex With Heme
Eur. J. Biochem. V. 271 4517 2004
(for further references see the
PDB file header
)
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3a: ISOPROPYL ALCOHOL (IPAa)
3b: ISOPROPYL ALCOHOL (IPAb)
3c: ISOPROPYL ALCOHOL (IPAc)
3d: ISOPROPYL ALCOHOL (IPAd)
3e: ISOPROPYL ALCOHOL (IPAe)
3f: ISOPROPYL ALCOHOL (IPAf)
3g: ISOPROPYL ALCOHOL (IPAg)
3h: ISOPROPYL ALCOHOL (IPAh)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
5
Ligand/Ion
CHLORIDE ION
2
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
IPA
8
Ligand/Ion
ISOPROPYL ALCOHOL
4
PO4
2
Ligand/Ion
PHOSPHATE ION
[
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]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:165 , LYS A:168 , LYS D:165 , LYS D:168 , ARG D:172
BINDING SITE FOR RESIDUE PO4 A 241
02
AC2
SOFTWARE
LYS B:165 , LYS B:168 , ARG B:172 , LYS C:165 , LYS C:168 , ARG C:172
BINDING SITE FOR RESIDUE PO4 B 241
03
AC3
SOFTWARE
LYS B:14
BINDING SITE FOR RESIDUE CL B 242
04
AC4
SOFTWARE
ARG C:10
BINDING SITE FOR RESIDUE CL C 241
05
AC5
SOFTWARE
ARG A:108 , ASP A:194
BINDING SITE FOR RESIDUE CL A 243
06
AC6
SOFTWARE
ARG A:10 , HIS A:17 , ALA A:20 , LEU A:30 , TYR A:125 , THR A:126 , GLY A:130 , SER A:133 , ILE A:137 , LEU A:138 , LYS A:168 , ARG A:172 , PHE A:203 , HOH A:1006 , LYS D:165
BINDING SITE FOR RESIDUE HEM A 300
07
AC7
SOFTWARE
ARG B:10 , HIS B:17 , ALA B:20 , VAL B:26 , LEU B:30 , TYR B:125 , THR B:126 , GLY B:130 , SER B:133 , GLY B:134 , LEU B:138 , PHE B:196 , ASN B:199 , HOH B:1007 , HOH B:1051 , LYS C:165
BINDING SITE FOR RESIDUE HEM B 300
08
AC8
SOFTWARE
LYS B:165 , ARG C:10 , HIS C:17 , ALA C:20 , VAL C:26 , TYR C:125 , THR C:126 , GLY C:130 , SER C:133 , ILE C:137 , LEU C:138 , PHE C:196 , ASN C:199 , HOH C:1008 , HOH C:1011 , HOH C:1012
BINDING SITE FOR RESIDUE HEM C 300
09
AC9
SOFTWARE
LYS A:165 , ARG D:10 , HIS D:17 , ALA D:20 , VAL D:26 , LEU D:30 , TYR D:125 , THR D:126 , ARG D:127 , GLY D:130 , SER D:133 , ILE D:137 , ARG D:172 , PHE D:196 , ASN D:199 , PHE D:203 , HOH D:1009
BINDING SITE FOR RESIDUE HEM D 300
10
BC1
SOFTWARE
TYR D:156 , PHE D:203
BINDING SITE FOR RESIDUE IPA D 1004
11
BC2
SOFTWARE
TYR C:156 , HOH C:1072
BINDING SITE FOR RESIDUE IPA C 1003
12
BC3
SOFTWARE
PHE B:203
BINDING SITE FOR RESIDUE IPA B 1002
13
BC4
SOFTWARE
PHE A:29 , LEU A:42
BINDING SITE FOR RESIDUE IPA A 1001
14
BC5
SOFTWARE
GLU A:54 , MET A:57 , ILE A:69 , TYR A:70 , PHE A:71 , ASN A:75 , TYR A:128
BINDING SITE FOR RESIDUE IPA A 1005
15
BC6
SOFTWARE
MET B:57 , ILE B:69 , TYR B:70 , PHE B:71 , LEU B:74 , SER B:124 , TYR B:128
BINDING SITE FOR RESIDUE IPA B 1006
16
BC7
SOFTWARE
MET C:57 , ILE C:69 , PHE C:71 , LEU C:74 , ASN C:75 , SER C:124
BINDING SITE FOR RESIDUE IPA C 1007
17
BC8
SOFTWARE
MET D:57 , ILE D:69 , TYR D:70 , PHE D:71 , ASN D:75 , SER D:124 , TYR D:128
BINDING SITE FOR RESIDUE IPA D 1008
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: HEME_OXYGENASE (A:120-130,B:120-130,C:120-130,D:12...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEME_OXYGENASE
PS00593
Heme oxygenase signature.
HO1_SYNY3
120-130
4
A:120-130
B:120-130
C:120-130
D:120-130
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1we1a_ (A:)
1b: SCOP_d1we1b_ (B:)
1c: SCOP_d1we1c_ (C:)
1d: SCOP_d1we1d_ (D:)
View:
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme oxygenase-like
(107)
Superfamily
:
Heme oxygenase-like
(107)
Family
:
Eukaryotic type heme oxygenase
(69)
Protein domain
:
Heme oxygenase-1 (HO-1)
(49)
Synechocystis sp. [TaxId: 1143]
(1)
1a
d1we1a_
A:
1b
d1we1b_
B:
1c
d1we1c_
C:
1d
d1we1d_
D:
[
close SCOP info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1we1D00 (D:3-223)
1b: CATH_1we1A00 (A:2-223)
1c: CATH_1we1B00 (B:2-223)
1d: CATH_1we1C00 (C:2-223)
View:
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Classes
(
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(
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Heme Oxygenase; Chain A
(84)
Homologous Superfamily
:
Heme Oxygenase; Chain A
(84)
Pcc 6803 (Synechocystis sp)
(4)
1a
1we1D00
D:3-223
1b
1we1A00
A:2-223
1c
1we1B00
B:2-223
1d
1we1C00
C:2-223
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Heme_oxygenase_1we1D01 (D:3-205)
1b: PFAM_Heme_oxygenase_1we1D02 (D:3-205)
1c: PFAM_Heme_oxygenase_1we1D03 (D:3-205)
1d: PFAM_Heme_oxygenase_1we1D04 (D:3-205)
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Clans
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)
Organisms
(
)
(
)
Clan
:
HO
(49)
Family
:
Heme_oxygenase
(37)
Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1)
(4)
1a
Heme_oxygenase-1we1D01
D:3-205
1b
Heme_oxygenase-1we1D02
D:3-205
1c
Heme_oxygenase-1we1D03
D:3-205
1d
Heme_oxygenase-1we1D04
D:3-205
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