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Asym.Unit (248 KB)
Biol.Unit 1 (243 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PEROXIREDOXIN (AHPC) FROM AMPHIBACILLUS XYLANUS
Authors
:
K. Kitano, A. Kita, T. Hakoshima, Y. Niimura, K. Miki
Date
:
21 May 04 (Deposition) - 29 Mar 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Peroxiredoxin, Ahpc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Kitano, A. Kita, T. Hakoshima, Y. Niimura, K. Miki
Crystal Structure Of Decameric Peroxiredoxin (Ahpc) From Amphibacillus Xylanus
Proteins V. 59 644 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: AMMONIUM ION (NH4a)
1b: AMMONIUM ION (NH4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NH4
2
Ligand/Ion
AMMONIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA F:27 , LYS F:30 , ALA I:27 , LYS I:30
BINDING SITE FOR RESIDUE NH4 F 1001
2
AC2
SOFTWARE
ALA C:27 , LYS C:30 , ALA J:27 , LYS J:30
BINDING SITE FOR RESIDUE NH4 J 1002
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 10)
Info
All SCOP Domains
1a: SCOP_d1we0a1 (A:1-166)
2a: SCOP_d1we0b_ (B:)
2b: SCOP_d1we0c_ (C:)
2c: SCOP_d1we0d_ (D:)
2d: SCOP_d1we0e_ (E:)
2e: SCOP_d1we0f_ (F:)
2f: SCOP_d1we0g_ (G:)
2g: SCOP_d1we0h_ (H:)
2h: SCOP_d1we0i_ (I:)
2i: SCOP_d1we0j_ (J:)
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)
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)
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(
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
Alkyl hydroperoxide reductase AhpC
(9)
Amphibacillus xylanus [TaxId: 1449]
(1)
1a
d1we0a1
A:1-166
Protein domain
:
automated matches
(46)
Amphibacillus xylanus [TaxId: 1449]
(1)
2a
d1we0b_
B:
2b
d1we0c_
C:
2c
d1we0d_
D:
2d
d1we0e_
E:
2e
d1we0f_
F:
2f
d1we0g_
G:
2g
d1we0h_
H:
2h
d1we0i_
I:
2i
d1we0j_
J:
[
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CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_1we0A00 (A:1-166)
1b: CATH_1we0B00 (B:1-166)
1c: CATH_1we0C00 (C:1-166)
1d: CATH_1we0D00 (D:1-166)
1e: CATH_1we0E00 (E:1-166)
1f: CATH_1we0F00 (F:1-166)
1g: CATH_1we0G00 (G:1-166)
1h: CATH_1we0H00 (H:1-166)
1i: CATH_1we0I00 (I:1-166)
1j: CATH_1we0J00 (J:1-166)
View:
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)
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)
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Amphibacillus xylanus. Organism_taxid: 1449.
(1)
1a
1we0A00
A:1-166
1b
1we0B00
B:1-166
1c
1we0C00
C:1-166
1d
1we0D00
D:1-166
1e
1we0E00
E:1-166
1f
1we0F00
F:1-166
1g
1we0G00
G:1-166
1h
1we0H00
H:1-166
1i
1we0I00
I:1-166
1j
1we0J00
J:1-166
[
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Pfam Domains
(2, 20)
Info
all PFAM domains
1a: PFAM_AhpC_TSA_1we0J01 (J:3-134)
1b: PFAM_AhpC_TSA_1we0J02 (J:3-134)
1c: PFAM_AhpC_TSA_1we0J03 (J:3-134)
1d: PFAM_AhpC_TSA_1we0J04 (J:3-134)
1e: PFAM_AhpC_TSA_1we0J05 (J:3-134)
1f: PFAM_AhpC_TSA_1we0J06 (J:3-134)
1g: PFAM_AhpC_TSA_1we0J07 (J:3-134)
1h: PFAM_AhpC_TSA_1we0J08 (J:3-134)
1i: PFAM_AhpC_TSA_1we0J09 (J:3-134)
1j: PFAM_AhpC_TSA_1we0J10 (J:3-134)
2a: PFAM_1_cysPrx_C_1we0J11 (J:154-166)
2b: PFAM_1_cysPrx_C_1we0J12 (J:154-166)
2c: PFAM_1_cysPrx_C_1we0J13 (J:154-166)
2d: PFAM_1_cysPrx_C_1we0J14 (J:154-166)
2e: PFAM_1_cysPrx_C_1we0J15 (J:154-166)
2f: PFAM_1_cysPrx_C_1we0J16 (J:154-166)
2g: PFAM_1_cysPrx_C_1we0J17 (J:154-166)
2h: PFAM_1_cysPrx_C_1we0J18 (J:154-166)
2i: PFAM_1_cysPrx_C_1we0J19 (J:154-166)
2j: PFAM_1_cysPrx_C_1we0J20 (J:154-166)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Thioredoxin
(367)
Family
:
AhpC-TSA
(28)
Amphibacillus xylanus
(1)
1a
AhpC-TSA-1we0J01
J:3-134
1b
AhpC-TSA-1we0J02
J:3-134
1c
AhpC-TSA-1we0J03
J:3-134
1d
AhpC-TSA-1we0J04
J:3-134
1e
AhpC-TSA-1we0J05
J:3-134
1f
AhpC-TSA-1we0J06
J:3-134
1g
AhpC-TSA-1we0J07
J:3-134
1h
AhpC-TSA-1we0J08
J:3-134
1i
AhpC-TSA-1we0J09
J:3-134
1j
AhpC-TSA-1we0J10
J:3-134
Clan
:
no clan defined [family: 1-cysPrx_C]
(19)
Family
:
1-cysPrx_C
(19)
Amphibacillus xylanus
(1)
2a
1-cysPrx_C-1we0J11
J:154-166
2b
1-cysPrx_C-1we0J12
J:154-166
2c
1-cysPrx_C-1we0J13
J:154-166
2d
1-cysPrx_C-1we0J14
J:154-166
2e
1-cysPrx_C-1we0J15
J:154-166
2f
1-cysPrx_C-1we0J16
J:154-166
2g
1-cysPrx_C-1we0J17
J:154-166
2h
1-cysPrx_C-1we0J18
J:154-166
2i
1-cysPrx_C-1we0J19
J:154-166
2j
1-cysPrx_C-1we0J20
J:154-166
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