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1WDT
Asym. Unit
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Asym.Unit (115 KB)
Biol.Unit 1 (111 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TTK003000868 FROM THERMUS THERMOPHILUS HB8
Authors
:
H. Wang, C. Takemoto-Hori, K. Murayama, S. Sekine, T. Terada, M. Shirouzu, S. Kuramitsu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
17 May 04 (Deposition) - 17 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Gtp Complex, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Wang, C. Takemoto-Hori, K. Murayama, S. Sekine, T. Terada, M. Shirouzu, S. Kuramitsu, S. Yokoyama
Crystal Structure Of Ttk003000868 From Thermus Thermophilus Hb8
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
2a: MAGNESIUM ION (MGa)
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No.
Name
Count
Type
Full Name
1
GTP
1
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
2
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:23 , THR A:61 , GTP A:700 , HOH A:702 , HOH A:703
BINDING SITE FOR RESIDUE MG A 701
2
AC2
SOFTWARE
ALA A:18 , GLY A:19 , SER A:20 , GLY A:21 , LYS A:22 , THR A:23 , THR A:24 , VAL A:42 , GLU A:43 , THR A:60 , THR A:61 , GLY A:83 , LYS A:135 , ASP A:137 , LYS A:138 , SER A:254 , GLU A:256 , MG A:701 , HOH A:702 , HOH A:753 , HOH A:903
BINDING SITE FOR RESIDUE GTP A 700
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 5)
Info
All SCOP Domains
1a: SCOP_d1wdta1 (A:275-377)
2a: SCOP_d1wdta4 (A:570-665)
2b: SCOP_d1wdta5 (A:378-454)
3a: SCOP_d1wdta3 (A:455-569)
4a: SCOP_d1wdta2 (A:8-274)
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Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
Elongation factors
(77)
Protein domain
:
Elongation factor G (EF-G), domain II
(11)
Thermus thermophilus, EF-G-2 [TaxId: 274]
(2)
1a
d1wdta1
A:275-377
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
EF-G C-terminal domain-like
(33)
Family
:
EF-G/eEF-2 domains III and V
(24)
Protein domain
:
Elongation factor G (EF-G)
(11)
Thermus thermophilus, EF-G-2 [TaxId: 274]
(2)
2a
d1wdta4
A:570-665
2b
d1wdta5
A:378-454
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
Translational machinery components
(150)
Protein domain
:
Elongation factor G (EF-G), domain IV
(11)
Thermus thermophilus, EF-G-2 [TaxId: 274]
(2)
3a
d1wdta3
A:455-569
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Elongation factor G (EF-G), N-terminal (G) domain
(11)
Thermus thermophilus, EF-G-2 [TaxId: 274]
(2)
4a
d1wdta2
A:8-274
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1wdtA03 (A:378-453)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
Elongation Factor G (Translational Gtpase), domain 3
(20)
Thermus thermophilus. Organism_taxid: 274.
(6)
1a
1wdtA03
A:378-453
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Pfam Domains
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Asymmetric Unit 1
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