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1WD8
Biol. Unit 1
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Asym.Unit (97 KB)
Biol.Unit 1 (177 KB)
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(1)
Title
:
CALCIUM FREE FORM OF HUMAN PEPTIDYLARGININE DEIMINASE TYPE4 (PAD4)
Authors
:
K. Arita, H. Hashimoto, T. Shimizu, K. Nakashima, M. Yamada, M. Sato
Date
:
12 May 04 (Deposition) - 13 Jul 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Post-Translational Enzyme, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Arita, H. Hashimoto, T. Shimizu, K. Nakashima, M. Yamada, M. Sato
Structural Basis For Ca(2+)-Induced Activation Of Human Pad
Nat. Struct. Mol. Biol. V. 11 777 2004
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(8, 16)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_053560 (R8H, chain A, )
2: VAR_053561 (T79M, chain A, )
3: VAR_020640 (A82A, chain A, )
4: VAR_027401 (D89N, chain A, )
5: VAR_027402 (P102T, chain A, )
6: VAR_020641 (A112A, chain A, )
7: VAR_053562 (D260N, chain A, )
8: VAR_020642 (S275F, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_053560
R
8
H
PADI4_HUMAN
Polymorphism
35381732
A
R
8
H
2
UniProt
VAR_053561
T
79
M
PADI4_HUMAN
Polymorphism
35809521
A
T
79
M
3
UniProt
VAR_020640
V
82
A
PADI4_HUMAN
Polymorphism
11203367
A
A
82
A
4
UniProt
VAR_027401
D
89
N
PADI4_HUMAN
Polymorphism
---
A
D
89
N
5
UniProt
VAR_027402
P
102
T
PADI4_HUMAN
Polymorphism
34309058
A
P
102
T
6
UniProt
VAR_020641
G
112
A
PADI4_HUMAN
Polymorphism
874881
A
A
112
A
7
UniProt
VAR_053562
D
260
N
PADI4_HUMAN
Polymorphism
35903413
A
D
260
N
8
UniProt
VAR_020642
S
275
F
PADI4_HUMAN
Polymorphism
1748020
A
S
275
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1wd8a1 (A:113-293)
2a: SCOP_d1wd8a2 (A:4-112)
3a: SCOP_d1wd8a3 (A:294-663)
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Protein Domains
(
)
(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Peptidylarginine deiminase Pad4, middle domain
(12)
Family
:
Peptidylarginine deiminase Pad4, middle domain
(12)
Protein domain
:
Peptidylarginine deiminase Pad4, middle domain
(12)
Human (Homo sapiens) [TaxId: 9606]
(12)
1a
d1wd8a1
A:113-293
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Peptidylarginine deiminase Pad4, N-terminal domain
(12)
Protein domain
:
Peptidylarginine deiminase Pad4, N-terminal domain
(12)
Human (Homo sapiens) [TaxId: 9606]
(12)
2a
d1wd8a2
A:4-112
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Pentein, beta/alpha-propeller
(68)
Superfamily
:
Pentein
(68)
Family
:
Peptidylarginine deiminase Pad4, catalytic C-terminal domain
(12)
Protein domain
:
Peptidylarginine deiminase Pad4, catalytic C-terminal domain
(12)
Human (Homo sapiens) [TaxId: 9606]
(12)
3a
d1wd8a3
A:294-663
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_PAD_1wd8A01 (A:278-663)
2a: PFAM_PAD_M_1wd8A02 (A:113-273)
3a: PFAM_PAD_N_1wd8A03 (A:2-111)
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(
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Organisms
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)
(
)
Clan
:
GME
(20)
Family
:
PAD
(3)
Homo sapiens (Human)
(3)
1a
PAD-1wd8A01
A:278-663
Clan
:
no clan defined [family: PAD_M]
(3)
Family
:
PAD_M
(3)
Homo sapiens (Human)
(3)
2a
PAD_M-1wd8A02
A:113-273
Clan
:
no clan defined [family: PAD_N]
(3)
Family
:
PAD_N
(3)
Homo sapiens (Human)
(3)
3a
PAD_N-1wd8A03
A:2-111
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Chain A
Asymmetric Unit 1
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