PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1WD2
Asym. Unit
Info
Asym.Unit (317 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE C-TERMINAL RING FROM A RING-IBR-RING (TRIAD) MOTIF
Authors
:
A. D. Capili, E. L. Edghill, K. Wu, K. L. B. Borden
Date
:
11 May 04 (Deposition) - 20 Jul 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Ring, Ibr, Triad, Zinc Finger, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. D. Capili, E. L. Edghill, K. Wu, K. L. B. Borden
Structure Of The C-Terminal Ring Finger From A Ring-Ibr-Ring/Triad Motif Reveals A Novel Zinc-Binding Domain Distinct From A Ring
J. Mol. Biol. V. 340 1117 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:19 , CYS A:22 , CYS A:37 , CYS A:42 , PHE A:46
BINDING SITE FOR RESIDUE ZN A 71
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.9 (A:11-17)
Exon 1.10 (A:18-61)
Exon 1.11 (A:61-69)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.8/1.9
2: Boundary 1.9/1.10
3: Boundary 1.10/1.11
4: Boundary 1.11/1.12
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000379887
1a
ENSE00001179017
chr15:
72766667-72767355
689
ARI1_HUMAN
1-125
125
0
-
-
1.2
ENST00000379887
2
ENSE00001101260
chr15:
72810408-72810475
68
ARI1_HUMAN
126-148
23
0
-
-
1.3
ENST00000379887
3
ENSE00001101256
chr15:
72837161-72837305
145
ARI1_HUMAN
148-196
49
0
-
-
1.4
ENST00000379887
4
ENSE00001101269
chr15:
72847612-72847704
93
ARI1_HUMAN
197-227
31
0
-
-
1.5
ENST00000379887
5
ENSE00001101262
chr15:
72848193-72848248
56
ARI1_HUMAN
228-246
19
0
-
-
1.6
ENST00000379887
6
ENSE00001101249
chr15:
72853824-72853890
67
ARI1_HUMAN
246-268
23
0
-
-
1.7
ENST00000379887
7
ENSE00001101252
chr15:
72855735-72855841
107
ARI1_HUMAN
269-304
36
0
-
-
1.8
ENST00000379887
8
ENSE00001101274
chr15:
72858904-72858946
43
ARI1_HUMAN
304-318
15
0
-
-
1.9
ENST00000379887
9
ENSE00001178800
chr15:
72859447-72859518
72
ARI1_HUMAN
319-342
24
1
A:11-17
7
1.10
ENST00000379887
10
ENSE00001250190
chr15:
72862518-72862648
131
ARI1_HUMAN
343-386
44
1
A:18-61
44
1.11
ENST00000379887
11
ENSE00001250183
chr15:
72864449-72864506
58
ARI1_HUMAN
386-405
20
1
A:61-69
9
1.12
ENST00000379887
12
ENSE00001250178
chr15:
72873072-72873332
261
ARI1_HUMAN
406-492
87
0
-
-
1.13
ENST00000379887
13
ENSE00001250171
chr15:
72874416-72874528
113
ARI1_HUMAN
493-530
38
0
-
-
1.14b
ENST00000379887
14b
ENSE00001907796
chr15:
72875549-72879692
4144
ARI1_HUMAN
530-557
28
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1wd2a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
RING/U-box
(48)
Superfamily
:
RING/U-box
(48)
Family
:
RING finger domain, C3HC4
(23)
Protein domain
:
Ariadne-1 protein homolog
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1wd2a_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_IBR_1wd2A01 (A:11-64)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: IBR]
(2)
Family
:
IBR
(2)
Homo sapiens (Human)
(2)
1a
IBR-1wd2A01
A:11-64
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (317 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1WD2
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
