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1WBP
Asym. Unit
Info
Asym.Unit (67 KB)
Biol.Unit 1 (61 KB)
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(1)
Title
:
SRPK1 BOUND TO 9MER DOCKING MOTIF PEPTIDE
Authors
:
J. C. Ngo, S. Chakrabarti, J. -H. Ding, A. Velazquez-Dones, B. Nolen, B. J. A. Adams, X. -D. Fu, G. Ghosh
Date
:
04 Nov 04 (Deposition) - 19 Oct 05 (Release) - 08 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Srpk, Kinase, Serine/Threonine-Protein Kinase, Transferase, Atp-Binding, Chromosome Partition, Differentiation, Mrna Processing, Mrna Splicing, Nuclear Protein, Nucleotide-Binding, Phosphorylation
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Ngo, S. Chakrabarti, J. -H. Ding, A. Velazquez-Dones, B. Nolen, B. E. Aubol, J. A. Adams, X. -D. Fu, G. Ghosh
Interplay Between Srpk And Clk/Sty Kinases In Phosphorylation Of The Splicing Factor Asf/Sf2 Is Regulated By A Docking Motif In Asf/Sf2
Mol. Cell V. 20 77 2005
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:215 , GLU A:217
BINDING SITE FOR RESIDUE ACT A 900
2
AC2
SOFTWARE
LEU A:86 , GLY A:87 , TRP A:88 , GLY A:89 , SER A:92 , VAL A:94 , ALA A:107 , LYS A:109 , GLU A:166 , LEU A:168
BINDING SITE FOR RESIDUE ADP A 950
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051669 (I72T, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051669
I
72
T
SRPK1_HUMAN
Polymorphism
35519113
A
I
72
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:86-109)
2: PROTEIN_KINASE_ST (A:209-221)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
SRPK1_HUMAN
86-109
1
A:86-109
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
SRPK1_HUMAN
209-221
1
A:209-221
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Exons
(10, 10)
Info
All Exons
Exon 1.5 (A:67-101)
Exon 1.6a (A:101-130)
Exon 1.7c (A:131-160)
Exon 1.8b (A:160-195)
Exon 1.9 (A:196-237)
Exon 1.13c (A:477-504)
Exon 1.14a (A:505-540)
Exon 1.15 (A:541-564)
Exon 1.16c (A:564-595)
Exon 1.17c (A:595-655)
View:
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All Exon Boundaries
01: Boundary 1.4c/1.5
02: Boundary 1.5/1.6a
03: Boundary 1.6a/1.7c
04: Boundary 1.7c/1.8b
05: Boundary 1.8b/1.9
06: Boundary 1.9/1.10b
07: Boundary 1.12c/1.13c
08: Boundary 1.13c/1.14a
09: Boundary 1.14a/1.15
10: Boundary 1.15/1.16c
11: Boundary 1.16c/1.17c
12: Boundary 1.17c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000373825
1a
ENSE00002200129
chr6:
35889119-35888821
299
SRPK1_HUMAN
1-5
5
0
-
-
1.1j
ENST00000373825
1j
ENSE00002153471
chr6:
35888305-35888245
61
SRPK1_HUMAN
5-25
21
0
-
-
1.4c
ENST00000373825
4c
ENSE00002186784
chr6:
35858790-35858672
119
SRPK1_HUMAN
25-65
41
0
-
-
1.5
ENST00000373825
5
ENSE00002182848
chr6:
35856700-35856592
109
SRPK1_HUMAN
65-101
37
1
A:67-101
35
1.6a
ENST00000373825
6a
ENSE00002183727
chr6:
35855888-35855801
88
SRPK1_HUMAN
101-130
30
1
A:101-130
30
1.7c
ENST00000373825
7c
ENSE00002191548
chr6:
35854588-35854501
88
SRPK1_HUMAN
131-160
30
1
A:131-160
30
1.8b
ENST00000373825
8b
ENSE00002187434
chr6:
35842116-35842010
107
SRPK1_HUMAN
160-195
36
1
A:160-195
36
1.9
ENST00000373825
9
ENSE00002160762
chr6:
35840505-35840340
166
SRPK1_HUMAN
196-251
56
1
A:196-237
42
1.10b
ENST00000373825
10b
ENSE00002177696
chr6:
35838736-35838711
26
SRPK1_HUMAN
251-259
9
0
-
-
1.11
ENST00000373825
11
ENSE00002143565
chr6:
35838271-35838058
214
SRPK1_HUMAN
260-331
72
0
-
-
1.12c
ENST00000373825
12c
ENSE00002182450
chr6:
35837678-35837259
420
SRPK1_HUMAN
331-471
141
0
-
-
1.13c
ENST00000373825
13c
ENSE00002197474
chr6:
35836887-35836787
101
SRPK1_HUMAN
471-504
34
1
A:477-504
28
1.14a
ENST00000373825
14a
ENSE00002178481
chr6:
35825145-35825038
108
SRPK1_HUMAN
505-540
36
1
A:505-540
36
1.15
ENST00000373825
15
ENSE00002194065
chr6:
35810381-35810312
70
SRPK1_HUMAN
541-564
24
1
A:541-564
24
1.16c
ENST00000373825
16c
ENSE00002190158
chr6:
35806206-35806114
93
SRPK1_HUMAN
564-595
32
1
A:564-595
32
1.17c
ENST00000373825
17c
ENSE00002026764
chr6:
35803265-35800743
2523
SRPK1_HUMAN
595-655
61
1
A:595-655
61
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1wbpA01 (A:67-133,A:145-167)
2a: CATH_1wbpA02 (A:134-144,A:168-655)
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Organisms
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)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
1wbpA01
A:67-133,A:145-167
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
1wbpA02
A:134-144,A:168-655
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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