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1WB6
Biol. Unit 2
Info
Asym.Unit (230 KB)
Biol.Unit 1 (113 KB)
Biol.Unit 2 (113 KB)
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(1)
Title
:
S954A MUTANT OF THE FERULOYL ESTERASE MODULE FROM CLOSTRIDIUM THERMOCELLUM COMPLEXED WITH VANILLATE
Authors
:
N. Tarbouriech, J. A. Prates, C. Fontes, G. J. Davies
Date
:
30 Oct 04 (Deposition) - 24 May 06 (Release) - 02 Feb 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Esterase Family 1, Ferulic Acid, Glycosidase, Hydrolase, Xylan Degradation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Tarbouriech, J. A. Prates, C. Fontes, G. J. Davies
Molecular Determinants Of Substrate Specificity In The Feruloyl Esterase Module Of Xylanase 10B From Clostridium Thermocellum
Acta Crystallogr. , Sect. D V. 61 194 2005
[
close entry info
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
2f: CADMIUM ION (CDf)
2g: CADMIUM ION (CDg)
2h: CADMIUM ION (CDh)
2i: CADMIUM ION (CDi)
2j: CADMIUM ION (CDj)
2k: CADMIUM ION (CDk)
2l: CADMIUM ION (CDl)
2m: CADMIUM ION (CDm)
2n: CADMIUM ION (CDn)
2o: CADMIUM ION (CDo)
2p: CADMIUM ION (CDp)
2q: CADMIUM ION (CDq)
2r: CADMIUM ION (CDr)
2s: CADMIUM ION (CDs)
2t: CADMIUM ION (CDt)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
4a: METHYL VANILLATE (VXXa)
4b: METHYL VANILLATE (VXXb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CD
-1
Ligand/Ion
CADMIUM ION
3
GOL
4
Ligand/Ion
GLYCEROL
4
VXX
1
Ligand/Ion
METHYL VANILLATE
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC4 (SOFTWARE)
03: BC2 (SOFTWARE)
04: BC3 (SOFTWARE)
05: BC4 (SOFTWARE)
06: BC5 (SOFTWARE)
07: BC6 (SOFTWARE)
08: BC7 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC2 (SOFTWARE)
13: CC3 (SOFTWARE)
14: CC4 (SOFTWARE)
15: CC6 (SOFTWARE)
16: CC9 (SOFTWARE)
17: DC1 (SOFTWARE)
18: DC2 (SOFTWARE)
19: DC3 (SOFTWARE)
20: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
CYS A:823 , HIS A:886 , MET A:889 , HOH A:3147 , GLU B:1017
BINDING SITE FOR RESIDUE CD A2091
02
AC4
SOFTWARE
GLU A:1007 , HIS B:1082 , HIS B:1084 , HOH B:3318 , HOH B:3329
BINDING SITE FOR RESIDUE CD A2093
03
BC2
SOFTWARE
CD A:2097 , HOH A:3182 , HOH A:3185 , HOH A:3192 , HOH A:3194 , HOH B:3175 , HOH B:3340
BINDING SITE FOR RESIDUE CD A2100
04
BC3
SOFTWARE
TYR B:857 , HIS B:1081 , CD B:2097
BINDING SITE FOR RESIDUE ACT B2091
05
BC4
SOFTWARE
GLU A:1017 , CYS B:823 , HIS B:886 , MET B:889 , HOH B:3137
BINDING SITE FOR RESIDUE CD B2092
06
BC5
SOFTWARE
GLU B:894 , HIS B:1076 , GLU B:1079 , HIS B:1083 , HIS B:1085
BINDING SITE FOR RESIDUE CD B2093
07
BC6
SOFTWARE
HIS A:1082 , HIS A:1084 , HOH A:3319 , HOH A:3329 , GLU B:1007
BINDING SITE FOR RESIDUE CD B2094
08
BC7
SOFTWARE
HIS B:947 , HIS B:1080 , CD B:2099 , HOH B:3200 , HOH B:3296 , HOH B:3308
BINDING SITE FOR RESIDUE CD B2095
09
BC8
SOFTWARE
HIS B:1081 , CD B:2097 , HOH B:3315 , HOH B:3319
BINDING SITE FOR RESIDUE CD B2096
10
BC9
SOFTWARE
HIS B:1081 , ACT B:2091 , CD B:2096
BINDING SITE FOR RESIDUE CD B2097
11
CC1
SOFTWARE
HOH A:3183 , ALA B:933 , GOL B:2088 , HOH B:3181 , HOH B:3182
BINDING SITE FOR RESIDUE CD B2098
12
CC2
SOFTWARE
HIS B:947 , LEU B:1078 , HIS B:1080 , CD B:2095 , HOH B:3296
BINDING SITE FOR RESIDUE CD B2099
13
CC3
SOFTWARE
HIS B:1076 , HOH B:3292 , HOH B:3297 , HOH B:3301 , HOH B:3304
BINDING SITE FOR RESIDUE CD B2100
14
CC4
SOFTWARE
LYS B:1032 , LEU B:1034 , PHE B:1037 , HOH B:3258 , HOH B:3260
BINDING SITE FOR RESIDUE CD B2101
15
CC6
SOFTWARE
GLY B:979 , ASP B:980 , TRP B:982 , ALA B:1020 , ASN B:1023 , HIS B:1058 , GOL B:2087 , HOH B:3337
BINDING SITE FOR RESIDUE VXX B2086
16
CC9
SOFTWARE
GLN A:915 , ARG A:918 , ASN A:966 , HOH A:3342 , HOH A:3343 , ASN B:838 , ASN B:907
BINDING SITE FOR RESIDUE GOL A2089
17
DC1
SOFTWARE
GLY B:865 , GLY B:866 , GLU B:868 , PHE B:953 , ALA B:954 , HIS B:1058 , VXX B:2086 , HOH B:3337 , HOH B:3338
BINDING SITE FOR RESIDUE GOL B2087
18
DC2
SOFTWARE
SER A:927 , LYS A:928 , GLU B:926 , SER B:927 , LYS B:928 , TYR B:929 , SER B:930 , CD B:2098 , HOH B:3180 , HOH B:3339 , HOH B:3340
BINDING SITE FOR RESIDUE GOL B2088
19
DC3
SOFTWARE
ILE A:837 , ASN A:838 , ASN A:907 , ASN A:912 , HOH A:3075 , GLN B:915 , ARG B:918 , ASN B:966 , HOH B:3341
BINDING SITE FOR RESIDUE GOL B2089
20
DC4
SOFTWARE
LYS B:856 , TYR B:857 , ASN B:858 , GLU B:894 , PRO B:895 , TYR B:932 , HIS B:1081
BINDING SITE FOR RESIDUE GOL B2090
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
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[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1wb6a_ (A:)
1b: SCOP_d1wb6b_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Carboxylesterase
(24)
Protein domain
:
automated matches
(4)
Clostridium thermocellum [TaxId: 1515]
(3)
1a
d1wb6a_
A:
1b
d1wb6b_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1wb6A00 (A:803-1085)
1b: CATH_1wb6B00 (B:803-1085)
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Homologous Superfamilies
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Clostridium thermocellum. Organism_taxid: 1515.
(3)
1a
1wb6A00
A:803-1085
1b
1wb6B00
B:803-1085
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Esterase_1wb6B01 (B:835-1072)
1b: PFAM_Esterase_1wb6B02 (B:835-1072)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
AB_hydrolase
(347)
Family
:
Esterase
(10)
Clostridium thermocellum
(3)
1a
Esterase-1wb6B01
B:835-1072
1b
Esterase-1wb6B02
B:835-1072
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Chain B
Asymmetric Unit 1
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Asym.Unit (230 KB)
Header - Asym.Unit
Biol.Unit 1 (113 KB)
Header - Biol.Unit 1
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