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1WB6
Asym. Unit
Info
Asym.Unit (230 KB)
Biol.Unit 1 (113 KB)
Biol.Unit 2 (113 KB)
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(1)
Title
:
S954A MUTANT OF THE FERULOYL ESTERASE MODULE FROM CLOSTRIDIUM THERMOCELLUM COMPLEXED WITH VANILLATE
Authors
:
N. Tarbouriech, J. A. Prates, C. Fontes, G. J. Davies
Date
:
30 Oct 04 (Deposition) - 24 May 06 (Release) - 02 Feb 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Esterase Family 1, Ferulic Acid, Glycosidase, Hydrolase, Xylan Degradation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Tarbouriech, J. A. Prates, C. Fontes, G. J. Davies
Molecular Determinants Of Substrate Specificity In The Feruloyl Esterase Module Of Xylanase 10B From Clostridium Thermocellum
Acta Crystallogr. , Sect. D V. 61 194 2005
[
close entry info
]
Hetero Components
(4, 31)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
2f: CADMIUM ION (CDf)
2g: CADMIUM ION (CDg)
2h: CADMIUM ION (CDh)
2i: CADMIUM ION (CDi)
2j: CADMIUM ION (CDj)
2k: CADMIUM ION (CDk)
2l: CADMIUM ION (CDl)
2m: CADMIUM ION (CDm)
2n: CADMIUM ION (CDn)
2o: CADMIUM ION (CDo)
2p: CADMIUM ION (CDp)
2q: CADMIUM ION (CDq)
2r: CADMIUM ION (CDr)
2s: CADMIUM ION (CDs)
2t: CADMIUM ION (CDt)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
4a: METHYL VANILLATE (VXXa)
4b: METHYL VANILLATE (VXXb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
CD
20
Ligand/Ion
CADMIUM ION
3
GOL
7
Ligand/Ion
GLYCEROL
4
VXX
2
Ligand/Ion
METHYL VANILLATE
[
close Hetero Component info
]
Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:856 , TYR A:857 , HIS A:1081 , CD A:2096 , HOH A:3344 , HOH A:3345
BINDING SITE FOR RESIDUE ACT A2090
02
AC2
SOFTWARE
CYS A:823 , HIS A:886 , MET A:889 , HOH A:3147 , GLU B:1017
BINDING SITE FOR RESIDUE CD A2091
03
AC3
SOFTWARE
GLU A:894 , HIS A:1076 , GLU A:1079 , HIS A:1083 , HIS A:1085
BINDING SITE FOR RESIDUE CD A2092
04
AC4
SOFTWARE
GLU A:1007 , HIS B:1082 , HIS B:1084 , HOH B:3318 , HOH B:3329
BINDING SITE FOR RESIDUE CD A2093
05
AC5
SOFTWARE
HIS A:947 , HIS A:1080 , HOH A:3205 , HOH A:3299 , HOH A:3309
BINDING SITE FOR RESIDUE CD A2094
06
AC6
SOFTWARE
HIS A:1081 , CD A:2096 , HOH A:3315 , HOH A:3318 , HOH A:3324
BINDING SITE FOR RESIDUE CD A2095
07
AC7
SOFTWARE
HIS A:1081 , ACT A:2090 , CD A:2095
BINDING SITE FOR RESIDUE CD A2096
08
AC8
SOFTWARE
GLU A:926 , TYR A:929 , CD A:2100 , HOH A:3182 , HOH A:3185 , HOH A:3191 , HOH A:3192
BINDING SITE FOR RESIDUE CD A2097
09
AC9
SOFTWARE
LYS A:1032 , LEU A:1034 , PHE A:1037 , HOH A:3264 , HOH A:3267
BINDING SITE FOR RESIDUE CD A2098
10
BC1
SOFTWARE
HIS A:1076 , HOH A:3296 , HOH A:3300 , HOH A:3304 , HOH A:3305
BINDING SITE FOR RESIDUE CD A2099
11
BC2
SOFTWARE
CD A:2097 , HOH A:3182 , HOH A:3185 , HOH A:3192 , HOH A:3194 , HOH B:3175 , HOH B:3340
BINDING SITE FOR RESIDUE CD A2100
12
BC3
SOFTWARE
TYR B:857 , HIS B:1081 , CD B:2097
BINDING SITE FOR RESIDUE ACT B2091
13
BC4
SOFTWARE
GLU A:1017 , CYS B:823 , HIS B:886 , MET B:889 , HOH B:3137
BINDING SITE FOR RESIDUE CD B2092
14
BC5
SOFTWARE
GLU B:894 , HIS B:1076 , GLU B:1079 , HIS B:1083 , HIS B:1085
BINDING SITE FOR RESIDUE CD B2093
15
BC6
SOFTWARE
HIS A:1082 , HIS A:1084 , HOH A:3319 , HOH A:3329 , GLU B:1007
BINDING SITE FOR RESIDUE CD B2094
16
BC7
SOFTWARE
HIS B:947 , HIS B:1080 , CD B:2099 , HOH B:3200 , HOH B:3296 , HOH B:3308
BINDING SITE FOR RESIDUE CD B2095
17
BC8
SOFTWARE
HIS B:1081 , CD B:2097 , HOH B:3315 , HOH B:3319
BINDING SITE FOR RESIDUE CD B2096
18
BC9
SOFTWARE
HIS B:1081 , ACT B:2091 , CD B:2096
BINDING SITE FOR RESIDUE CD B2097
19
CC1
SOFTWARE
HOH A:3183 , ALA B:933 , GOL B:2088 , HOH B:3181 , HOH B:3182
BINDING SITE FOR RESIDUE CD B2098
20
CC2
SOFTWARE
HIS B:947 , LEU B:1078 , HIS B:1080 , CD B:2095 , HOH B:3296
BINDING SITE FOR RESIDUE CD B2099
21
CC3
SOFTWARE
HIS B:1076 , HOH B:3292 , HOH B:3297 , HOH B:3301 , HOH B:3304
BINDING SITE FOR RESIDUE CD B2100
22
CC4
SOFTWARE
LYS B:1032 , LEU B:1034 , PHE B:1037 , HOH B:3258 , HOH B:3260
BINDING SITE FOR RESIDUE CD B2101
23
CC5
SOFTWARE
ALA A:954 , GLY A:979 , ASP A:980 , TRP A:982 , ALA A:1020 , ASN A:1023 , HIS A:1058 , GOL A:2087 , HOH A:3340
BINDING SITE FOR RESIDUE VXX A2086
24
CC6
SOFTWARE
GLY B:979 , ASP B:980 , TRP B:982 , ALA B:1020 , ASN B:1023 , HIS B:1058 , GOL B:2087 , HOH B:3337
BINDING SITE FOR RESIDUE VXX B2086
25
CC7
SOFTWARE
GLY A:865 , GLY A:866 , GLU A:868 , PHE A:953 , ALA A:954 , HIS A:1058 , TRP A:1060 , VXX A:2086 , HOH A:3339 , HOH A:3340
BINDING SITE FOR RESIDUE GOL A2087
26
CC8
SOFTWARE
LYS A:856 , TYR A:857 , ASN A:858 , GLU A:894 , PRO A:895 , TYR A:932 , HIS A:1081 , HOH A:3341
BINDING SITE FOR RESIDUE GOL A2088
27
CC9
SOFTWARE
GLN A:915 , ARG A:918 , ASN A:966 , HOH A:3342 , HOH A:3343 , ASN B:838 , ASN B:907
BINDING SITE FOR RESIDUE GOL A2089
28
DC1
SOFTWARE
GLY B:865 , GLY B:866 , GLU B:868 , PHE B:953 , ALA B:954 , HIS B:1058 , VXX B:2086 , HOH B:3337 , HOH B:3338
BINDING SITE FOR RESIDUE GOL B2087
29
DC2
SOFTWARE
SER A:927 , LYS A:928 , GLU B:926 , SER B:927 , LYS B:928 , TYR B:929 , SER B:930 , CD B:2098 , HOH B:3180 , HOH B:3339 , HOH B:3340
BINDING SITE FOR RESIDUE GOL B2088
30
DC3
SOFTWARE
ILE A:837 , ASN A:838 , ASN A:907 , ASN A:912 , HOH A:3075 , GLN B:915 , ARG B:918 , ASN B:966 , HOH B:3341
BINDING SITE FOR RESIDUE GOL B2089
31
DC4
SOFTWARE
LYS B:856 , TYR B:857 , ASN B:858 , GLU B:894 , PRO B:895 , TYR B:932 , HIS B:1081
BINDING SITE FOR RESIDUE GOL B2090
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1wb6a_ (A:)
1b: SCOP_d1wb6b_ (B:)
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Classes
(
)
(
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Folds
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(
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Superfamilies
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Carboxylesterase
(24)
Protein domain
:
automated matches
(4)
Clostridium thermocellum [TaxId: 1515]
(3)
1a
d1wb6a_
A:
1b
d1wb6b_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1wb6A00 (A:803-1085)
1b: CATH_1wb6B00 (B:803-1085)
View:
Select:
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Classes
(
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Architectures
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Topologies
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Clostridium thermocellum. Organism_taxid: 1515.
(3)
1a
1wb6A00
A:803-1085
1b
1wb6B00
B:803-1085
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Esterase_1wb6B01 (B:835-1072)
1b: PFAM_Esterase_1wb6B02 (B:835-1072)
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Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
AB_hydrolase
(347)
Family
:
Esterase
(10)
Clostridium thermocellum
(3)
1a
Esterase-1wb6B01
B:835-1072
1b
Esterase-1wb6B02
B:835-1072
[
close Pfam info
]
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Asym.Unit (230 KB)
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