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1WB5
Biol. Unit 1
Info
Asym.Unit (225 KB)
Biol.Unit 1 (110 KB)
Biol.Unit 2 (111 KB)
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(1)
Title
:
S954A MUTANT OF THE FERULOYL ESTERASE MODULE FROM CLOSTRIDIUM THERMOCELLUM COMPLEXED WITH SYRINGATE
Authors
:
N. Tarbouriech, J. A. Prates, C. Fontes, G. J. Davies
Date
:
30 Oct 04 (Deposition) - 02 Feb 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Esterase Family 1, Ferulic Acid, Glycosidase, Hydrolase, Repeat, Xylan Degradation, Xylanase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Tarbouriech, J. A. Prates, C. Fontes, G. J. Davies
Molecular Determinants Of Substrate Specificity In The Feruloyl Esterase Module Of Xylanase 10B From Clostridium Thermocellum
Acta Crystallogr. , Sect. D V. 61 194 2005
[
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
2f: CADMIUM ION (CDf)
2g: CADMIUM ION (CDg)
2h: CADMIUM ION (CDh)
2i: CADMIUM ION (CDi)
2j: CADMIUM ION (CDj)
2k: CADMIUM ION (CDk)
2l: CADMIUM ION (CDl)
2m: CADMIUM ION (CDm)
2n: CADMIUM ION (CDn)
2o: CADMIUM ION (CDo)
2p: CADMIUM ION (CDp)
2q: CADMIUM ION (CDq)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: SYRINGATE (SYRa)
4b: SYRINGATE (SYRb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CD
-1
Ligand/Ion
CADMIUM ION
3
GOL
2
Ligand/Ion
GLYCEROL
4
SYR
1
Ligand/Ion
SYRINGATE
[
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]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC3 (SOFTWARE)
12: BC5 (SOFTWARE)
13: BC9 (SOFTWARE)
14: CC2 (SOFTWARE)
15: CC4 (SOFTWARE)
16: CC5 (SOFTWARE)
17: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:856 , TYR A:857 , HIS A:1081 , CD A:2095 , HOH A:3318 , HOH A:3319
BINDING SITE FOR RESIDUE ACT A2089
02
AC2
SOFTWARE
CYS A:823 , HIS A:886 , MET A:889 , HOH A:3131 , GLU B:1017
BINDING SITE FOR RESIDUE CD A2090
03
AC3
SOFTWARE
GLU A:894 , HIS A:1076 , GLU A:1079 , HIS A:1083 , HIS A:1085
BINDING SITE FOR RESIDUE CD A2091
04
AC4
SOFTWARE
GLU A:1007 , HIS B:1082 , HIS B:1084 , HOH B:3315
BINDING SITE FOR RESIDUE CD A2092
05
AC5
SOFTWARE
HIS A:947 , HIS A:1080 , HOH A:3182 , HOH A:3185 , HOH A:3286
BINDING SITE FOR RESIDUE CD A2093
06
AC6
SOFTWARE
HIS A:1081 , CD A:2095 , HOH A:3298 , HOH A:3300
BINDING SITE FOR RESIDUE CD A2094
07
AC7
SOFTWARE
HIS A:1081 , ACT A:2089 , CD A:2094
BINDING SITE FOR RESIDUE CD A2095
08
AC8
SOFTWARE
HIS A:1076 , HOH A:3132 , HOH A:3283 , HOH A:3284 , HOH A:3288 , HOH A:3290
BINDING SITE FOR RESIDUE CD A2096
09
AC9
SOFTWARE
GLU A:926 , TYR A:929 , CD A:2098 , HOH A:3162 , HOH A:3167 , HOH A:3172 , HOH A:3173
BINDING SITE FOR RESIDUE CD A2097
10
BC1
SOFTWARE
CD A:2097 , HOH A:3162 , HOH A:3167 , HOH A:3172 , HOH A:3175 , HOH B:3168 , HOH B:3337
BINDING SITE FOR RESIDUE CD A2098
11
BC3
SOFTWARE
GLU A:1017 , CYS B:823 , HIS B:886 , MET B:889 , HOH B:3134
BINDING SITE FOR RESIDUE CD B2090
12
BC5
SOFTWARE
HIS A:1082 , HIS A:1084 , GLU B:1007 , HOH B:3238
BINDING SITE FOR RESIDUE CD B2092
13
BC9
SOFTWARE
HOH A:3164 , ALA B:933 , GOL B:2088 , HOH B:3174 , HOH B:3175
BINDING SITE FOR RESIDUE CD B2096
14
CC2
SOFTWARE
ALA A:954 , GLY A:979 , ASP A:980 , TRP A:982 , ILE A:1019 , ALA A:1020 , ASN A:1023 , GOL A:2087 , HOH A:3094
BINDING SITE FOR RESIDUE SYR A2086
15
CC4
SOFTWARE
GLY A:865 , GLY A:866 , GLU A:868 , PHE A:953 , ALA A:954 , HIS A:1058 , TRP A:1060 , SYR A:2086 , HOH A:3094 , HOH A:3101 , HOH A:3315 , HOH A:3316
BINDING SITE FOR RESIDUE GOL A2087
16
CC5
SOFTWARE
LYS A:856 , TYR A:857 , ASN A:858 , GLU A:894 , PRO A:895 , TYR A:932 , HIS A:1081 , HOH A:3317
BINDING SITE FOR RESIDUE GOL A2088
17
CC7
SOFTWARE
SER A:927 , LYS A:928 , GLU B:926 , SER B:927 , LYS B:928 , TYR B:929 , SER B:930 , CD B:2096 , HOH B:3173 , HOH B:3175 , HOH B:3337 , HOH B:3338
BINDING SITE FOR RESIDUE GOL B2088
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1wb5a_ (A:)
1b: SCOP_d1wb5b_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Carboxylesterase
(24)
Protein domain
:
automated matches
(4)
Clostridium thermocellum [TaxId: 1515]
(3)
1a
d1wb5a_
A:
1b
d1wb5b_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1wb5A00 (A:803-1085)
1b: CATH_1wb5B00 (B:803-1085)
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Classes
(
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Architectures
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)
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)
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)
Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Clostridium thermocellum. Organism_taxid: 1515.
(3)
1a
1wb5A00
A:803-1085
1b
1wb5B00
B:803-1085
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Esterase_1wb5B01 (B:835-1072)
1b: PFAM_Esterase_1wb5B02 (B:835-1072)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
AB_hydrolase
(347)
Family
:
Esterase
(10)
Clostridium thermocellum
(3)
1a
Esterase-1wb5B01
B:835-1072
1b
Esterase-1wb5B02
B:835-1072
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (225 KB)
Header - Asym.Unit
Biol.Unit 1 (110 KB)
Header - Biol.Unit 1
Biol.Unit 2 (111 KB)
Header - Biol.Unit 2
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