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1WB4
Biol. Unit 2
Info
Asym.Unit (235 KB)
Biol.Unit 1 (115 KB)
Biol.Unit 2 (115 KB)
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(1)
Title
:
S954A MUTANT OF THE FERULOYL ESTERASE MODULE FROM CLOSTRIDIUM THERMOCELLUM COMPLEXED WITH SINAPINATE
Authors
:
N. Tarbouriech, J. A. Prates, C. Fontes, G. J. Davies
Date
:
30 Oct 04 (Deposition) - 02 Feb 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Esterase Family 1, Ferulic Acid, Glycosidase, Hydrolase, Repeat, Xylan Degradation, Xylanase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Tarbouriech, J. A. Prates, C. Fontes, G. J. Davies
Molecular Determinants Of Substrate Specificity In The Feruloyl Esterase Module Of Xylanase 10B From Clostridium Thermocellum
Acta Crystallogr. , Sect. D V. 61 194 2005
[
close entry info
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
2f: CADMIUM ION (CDf)
2g: CADMIUM ION (CDg)
2h: CADMIUM ION (CDh)
2i: CADMIUM ION (CDi)
2j: CADMIUM ION (CDj)
2k: CADMIUM ION (CDk)
2l: CADMIUM ION (CDl)
2m: CADMIUM ION (CDm)
2n: CADMIUM ION (CDn)
2o: CADMIUM ION (CDo)
2p: CADMIUM ION (CDp)
2q: CADMIUM ION (CDq)
2r: CADMIUM ION (CDr)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
4a: SINAPINATE (SXXa)
4b: SINAPINATE (SXXb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
1
Ligand/Ion
ACETIC ACID
2
CD
-1
Ligand/Ion
CADMIUM ION
3
GOL
4
Ligand/Ion
GLYCEROL
4
SXX
1
Ligand/Ion
SINAPINATE
[
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]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC9 (SOFTWARE)
04: BC1 (SOFTWARE)
05: BC2 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
11: BC8 (SOFTWARE)
12: BC9 (SOFTWARE)
13: CC2 (SOFTWARE)
14: CC6 (SOFTWARE)
15: CC7 (SOFTWARE)
16: CC8 (SOFTWARE)
17: CC9 (SOFTWARE)
18: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:823 , HIS A:886 , MET A:889 , HOH A:3157 , GLU B:1017
BINDING SITE FOR RESIDUE CD A2090
02
AC3
SOFTWARE
GLU A:1007 , HOH A:3259 , HIS B:1082 , HIS B:1084 , HOH B:3364
BINDING SITE FOR RESIDUE CD A2092
03
AC9
SOFTWARE
ASN A:985 , HOH A:3229 , HOH B:3096 , HOH B:3234
BINDING SITE FOR RESIDUE CD A2098
04
BC1
SOFTWARE
CD A:2097 , HOH A:3193 , HOH A:3197 , HOH A:3202 , HOH A:3206 , HOH B:3209 , HOH B:3376
BINDING SITE FOR RESIDUE CD A2099
05
BC2
SOFTWARE
GLU A:1017 , CYS B:823 , HIS B:886 , MET B:889 , HOH B:3157
BINDING SITE FOR RESIDUE CD B2092
06
BC3
SOFTWARE
GLU B:894 , HIS B:1076 , GLU B:1079 , HIS B:1083 , HIS B:1085
BINDING SITE FOR RESIDUE CD B2093
07
BC4
SOFTWARE
HIS A:1082 , HIS A:1084 , HOH A:3354 , GLU B:1007 , HOH B:3264
BINDING SITE FOR RESIDUE CD B2094
08
BC5
SOFTWARE
HIS B:947 , HIS B:1080 , HOH B:3216 , HOH B:3217 , HOH B:3342 , HOH B:3350
BINDING SITE FOR RESIDUE CD B2095
09
BC6
SOFTWARE
HIS B:1081 , CD B:2097 , HOH B:3355 , HOH B:3357 , HOH B:3362
BINDING SITE FOR RESIDUE CD B2096
10
BC7
SOFTWARE
HIS B:1081 , ACY B:2091 , CD B:2096 , HOH B:3357 , HOH B:3378
BINDING SITE FOR RESIDUE CD B2097
11
BC8
SOFTWARE
HOH A:3194 , ALA B:933 , GOL B:2088 , HOH B:3197 , HOH B:3198
BINDING SITE FOR RESIDUE CD B2098
12
BC9
SOFTWARE
HIS B:1076 , HOH B:3339 , HOH B:3341 , HOH B:3344 , HOH B:3346
BINDING SITE FOR RESIDUE CD B2099
13
CC2
SOFTWARE
MET B:955 , LEU B:958 , GLY B:979 , ASP B:980 , TRP B:982 , ALA B:1020 , ASN B:1023 , GOL B:2087 , HOH B:3373 , HOH B:3374
BINDING SITE FOR RESIDUE SXX B2086
14
CC6
SOFTWARE
GLY B:865 , GLY B:866 , GLU B:868 , PHE B:953 , ALA B:954 , HIS B:1058 , SXX B:2086 , HOH B:3373 , HOH B:3375
BINDING SITE FOR RESIDUE GOL B2087
15
CC7
SOFTWARE
SER A:927 , LYS A:928 , GLU B:926 , SER B:927 , LYS B:928 , TYR B:929 , SER B:930 , CD B:2098 , HOH B:3195 , HOH B:3196 , HOH B:3376
BINDING SITE FOR RESIDUE GOL B2088
16
CC8
SOFTWARE
ILE A:837 , ASN A:838 , ASN A:907 , ASN A:912 , GLN B:915 , ASN B:966 , HOH B:3183 , HOH B:3377
BINDING SITE FOR RESIDUE GOL B2089
17
CC9
SOFTWARE
LYS B:856 , TYR B:857 , ASN B:858 , GLU B:894 , PRO B:895 , TYR B:932 , HIS B:1081
BINDING SITE FOR RESIDUE GOL B2090
18
DC1
SOFTWARE
LYS B:856 , TYR B:857 , HIS B:1081 , CD B:2097 , HOH B:3113 , HOH B:3378 , HOH B:3379
BINDING SITE FOR RESIDUE ACY B2091
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1wb4a_ (A:)
1b: SCOP_d1wb4b_ (B:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Carboxylesterase
(24)
Protein domain
:
automated matches
(4)
Clostridium thermocellum [TaxId: 1515]
(3)
1a
d1wb4a_
A:
1b
d1wb4b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1wb4A00 (A:803-1085)
1b: CATH_1wb4B00 (B:803-1085)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Clostridium thermocellum. Organism_taxid: 1515.
(3)
1a
1wb4A00
A:803-1085
1b
1wb4B00
B:803-1085
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Esterase_1wb4B01 (B:835-1072)
1b: PFAM_Esterase_1wb4B02 (B:835-1072)
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Clans
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(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
AB_hydrolase
(347)
Family
:
Esterase
(10)
Clostridium thermocellum
(3)
1a
Esterase-1wb4B01
B:835-1072
1b
Esterase-1wb4B02
B:835-1072
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Chain B
Asymmetric Unit 1
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Asym.Unit (235 KB)
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