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1WAR
Asym. Unit
Info
Asym.Unit (102 KB)
Biol.Unit 1 (96 KB)
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(1)
Title
:
RECOMBINANT HUMAN PURPLE ACID PHOSPHATASE EXPRESSED IN PICHIA PASTORIS
Authors
:
A. P. Duff, D. B. Langley, R. Han, B. A. Averill, H. C. Freeman, J. M. Guss
Date
:
28 Oct 04 (Deposition) - 06 Jul 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.22
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Glycoprotein, Hydrolase, Iron, Iron Transport, Metalloenzyme, Purple Acid Phosphatase, Tartrate Resistant Acid Phosphatase, Uteroferrin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Strater, B. Jasper, M. Scholte, B. Krebs, A. P. Duff, D. B. Langley, R. Han, B. A. Averill, H. C. Freeman, J. M. Guss
Crystal Structures Of Recombinant Human Purple Acid Phosphatase With And Without An Inhibitory Conformation Of The Repression Loop.
J. Mol. Biol. V. 351 233 2005
[
close entry info
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE
2
Ligand/Ion
FE (III) ION
2
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
PO4
1
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:-1 , ASP A:59 , ILE A:60 , ASN A:95 , ALA A:98 , HOH A:2011
BINDING SITE FOR RESIDUE NAG A1095
2
AC2
SOFTWARE
ASP A:12 , ASP A:50 , TYR A:53 , HIS A:221 , FE A:402 , PO4 A:411 , HOH A:2008
BINDING SITE FOR RESIDUE FE A 401
3
AC3
SOFTWARE
ASP A:50 , ASN A:89 , HIS A:184 , HIS A:219 , FE A:401 , PO4 A:411 , HOH A:2008
BINDING SITE FOR RESIDUE FE A 402
4
AC4
SOFTWARE
ASP A:50 , TYR A:53 , ASN A:89 , HIS A:90 , HIS A:193 , HIS A:219 , HIS A:221 , FE A:401 , FE A:402 , HOH A:2008 , HOH A:2061
BINDING SITE FOR RESIDUE PO4 A 411
[
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SAPs(SNPs)/Variants
(11, 11)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_065920 (K31M, chain A, )
02: VAR_065921 (T68I, chain A, )
03: VAR_065922 (G88R, chain A, )
04: VAR_020602 (V127M, chain A, )
05: VAR_020603 (V179M, chain A, )
06: VAR_065923 (L180P, chain A, )
07: VAR_065924 (G194R, chain A, )
08: VAR_029288 (V200I, chain A, )
09: VAR_065925 (D220N, chain A, )
10: VAR_065926 (N241H, chain A, )
11: VAR_065927 (M243K, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_065920
K
52
M
PPA5_HUMAN
Disease (SPENCDI)
---
A
K
31
M
02
UniProt
VAR_065921
T
89
I
PPA5_HUMAN
Disease (SPENCDI)
---
A
T
68
I
03
UniProt
VAR_065922
G
109
R
PPA5_HUMAN
Disease (SPENCDI)
---
A
G
88
R
04
UniProt
VAR_020602
V
148
M
PPA5_HUMAN
Polymorphism
2305799
A
V
127
M
05
UniProt
VAR_020603
V
200
M
PPA5_HUMAN
Polymorphism
2229531
A
V
179
M
06
UniProt
VAR_065923
L
201
P
PPA5_HUMAN
Disease (SPENCDI)
---
A
L
180
P
07
UniProt
VAR_065924
G
215
R
PPA5_HUMAN
Disease (SPENCDI)
---
A
G
194
R
08
UniProt
VAR_029288
V
221
I
PPA5_HUMAN
Polymorphism
2229532
A
V
200
I
09
UniProt
VAR_065925
D
241
N
PPA5_HUMAN
Disease (SPENCDI)
---
A
D
220
N
10
UniProt
VAR_065926
N
262
H
PPA5_HUMAN
Disease (SPENCDI)
---
A
N
241
H
11
UniProt
VAR_065927
M
264
K
PPA5_HUMAN
Disease (SPENCDI)
---
A
M
243
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(4, 4)
Info
All Exons
Exon 1.4 (A:-6-66)
Exon 1.5 (A:67-109)
Exon 1.6 (A:109-224)
Exon 1.7 (A:225-304)
View:
Select:
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All Exon Boundaries
1: Boundary 1.3b/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000218758
1
ENSE00001484931
chr19:
11689801-11689659
143
PPA5_HUMAN
-
0
0
-
-
1.2b
ENST00000218758
2b
ENSE00001515028
chr19:
11689472-11689400
73
PPA5_HUMAN
-
0
0
-
-
1.3b
ENST00000218758
3b
ENSE00001363729
chr19:
11688494-11688408
87
PPA5_HUMAN
-
0
0
-
-
1.4
ENST00000218758
4
ENSE00000683857
chr19:
11688132-11687872
261
PPA5_HUMAN
1-87
87
1
A:-6-66
72
1.5
ENST00000218758
5
ENSE00000683853
chr19:
11687658-11687531
128
PPA5_HUMAN
88-130
43
1
A:67-109
43
1.6
ENST00000218758
6
ENSE00000683849
chr19:
11687403-11687058
346
PPA5_HUMAN
130-245
116
1
A:109-224
116
1.7
ENST00000218758
7
ENSE00001330055
chr19:
11686067-11685477
591
PPA5_HUMAN
246-325
80
1
A:225-304
80
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1wara_ (A:)
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)
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)
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(
)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
Purple acid phosphatase-like
(14)
Protein domain
:
automated matches
(7)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1wara_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1warA00 (A:-6-304)
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(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Human (Homo sapiens)
(36)
1a
1warA00
A:-6-304
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Metallophos_1warA01 (A:5-223)
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Calcineurin
(56)
Family
:
Metallophos
(45)
Homo sapiens (Human)
(15)
1a
Metallophos-1warA01
A:5-223
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Chain A
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