PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1WAA
Asym. Unit
Info
Asym.Unit (108 KB)
Biol.Unit 1 (97 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
IG27 PROTEIN DOMAIN
Authors
:
M. C. Vega, L. Valencia, P. Zou, M. Wilmanns
Date
:
25 Oct 04 (Deposition) - 05 Jul 06 (Release) - 28 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Metal Binding Protein, Calmodulin-Binding, Cytoskeleton, Immunoglobulin Domain, Muscle Protein, Phosphorylation, Repeat, Serine/Threonine- Protein Kinase, Structural Protein.
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Stacklies, M. C. Vega, M. Wilmanns, F. Grater
Mechanical Network In Titin Immunoglobulin From Force Distribution Analysis.
Plos Comput. Biol. V. 5 00306 2009
[
close entry info
]
Hetero Components
(1, 24)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
1i: ZINC ION (ZNi)
1j: ZINC ION (ZNj)
1k: ZINC ION (ZNk)
1l: ZINC ION (ZNl)
1m: ZINC ION (ZNm)
1n: ZINC ION (ZNn)
1o: ZINC ION (ZNo)
1p: ZINC ION (ZNp)
1q: ZINC ION (ZNq)
1r: ZINC ION (ZNr)
1s: ZINC ION (ZNs)
1t: ZINC ION (ZNt)
1u: ZINC ION (ZNu)
1v: ZINC ION (ZNv)
1w: ZINC ION (ZNw)
1x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
24
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:20 , HOH A:2098 , HOH A:2099 , HIS E:20
BINDING SITE FOR RESIDUE ZN A1090
02
AC2
SOFTWARE
GLU A:48 , HIS A:61 , HOH A:2100 , GLU E:22
BINDING SITE FOR RESIDUE ZN A1091
03
AC3
SOFTWARE
ASP A:29 , HOH A:2101 , ASP B:29 , ASP F:29
BINDING SITE FOR RESIDUE ZN A1092
04
AC4
SOFTWARE
HIS A:31 , HOH A:2102 , HOH A:2103 , ASP B:52
BINDING SITE FOR RESIDUE ZN A1093
05
AC5
SOFTWARE
GLU A:88 , HOH A:2104 , HOH A:2105 , GLU C:12 , GLU E:3
BINDING SITE FOR RESIDUE ZN A1094
06
AC6
SOFTWARE
GLU B:48 , HIS B:61 , HOH B:2079 , GLU D:22 , LYS D:55
BINDING SITE FOR RESIDUE ZN B1090
07
AC7
SOFTWARE
HIS B:31 , HOH B:2080 , HOH B:2081 , HOH B:2082 , GLU C:51
BINDING SITE FOR RESIDUE ZN B1091
08
AC8
SOFTWARE
GLU B:3 , HOH B:2083 , GLU D:12 , LYS D:87 , HOH D:2068
BINDING SITE FOR RESIDUE ZN B1092
09
AC9
SOFTWARE
HIS B:20 , HOH B:2084 , HOH B:2085 , HIS D:20
BINDING SITE FOR RESIDUE ZN B1093
10
BC1
SOFTWARE
ALA A:-2 , GLU B:5 , HOH B:2086 , HOH B:2087 , HOH B:2088
BINDING SITE FOR RESIDUE ZN B1094
11
BC2
SOFTWARE
GLU C:48 , HIS C:61 , HOH C:2068 , GLU F:22
BINDING SITE FOR RESIDUE ZN C1090
12
BC3
SOFTWARE
ASP C:29 , HOH C:2069 , ASP D:29 , ASP E:29
BINDING SITE FOR RESIDUE ZN C1091
13
BC4
SOFTWARE
HIS C:31 , HOH C:2070 , HOH C:2071 , ASP D:52
BINDING SITE FOR RESIDUE ZN C1092
14
BC5
SOFTWARE
ASP C:52 , HOH C:2072 , HOH C:2073 , ZN E:1090 , HOH E:2059 , HOH E:2060 , GLU F:51 , HOH F:2049
BINDING SITE FOR RESIDUE ZN C1093
15
BC6
SOFTWARE
GLU C:27 , HOH C:2074 , HOH C:2075 , GLU E:27
BINDING SITE FOR RESIDUE ZN C1094
16
BC7
SOFTWARE
GLU B:22 , GLU D:48 , HIS D:61 , HOH D:2070
BINDING SITE FOR RESIDUE ZN D1090
17
BC8
SOFTWARE
GLU A:51 , HIS D:31 , HOH D:2071 , HOH D:2072 , HOH D:2073 , GLU E:52
BINDING SITE FOR RESIDUE ZN D1091
18
BC9
SOFTWARE
GLU B:12 , GLU D:3 , GLU F:88
BINDING SITE FOR RESIDUE ZN D1092
19
CC1
SOFTWARE
GLU A:22 , GLU E:48 , HIS E:61 , HOH E:2057
BINDING SITE FOR RESIDUE ZN E1089
20
CC2
SOFTWARE
ZN C:1093 , HIS E:31 , HOH E:2058 , HOH E:2059 , HOH E:2060 , GLU F:51
BINDING SITE FOR RESIDUE ZN E1090
21
CC3
SOFTWARE
GLU C:5 , GLY E:-3 , HOH E:2061 , HOH E:2062
BINDING SITE FOR RESIDUE ZN E1091
22
CC4
SOFTWARE
HIS C:20 , HIS F:20 , HOH F:2073 , HOH F:2074
BINDING SITE FOR RESIDUE ZN F1090
23
CC5
SOFTWARE
GLU C:22 , LYS C:55 , GLU F:48 , HIS F:61 , HOH F:2075
BINDING SITE FOR RESIDUE ZN F1091
24
CC6
SOFTWARE
ASP A:52 , HIS F:31 , HOH F:2076
BINDING SITE FOR RESIDUE ZN F1092
[
close Site info
]
SAPs(SNPs)/Variants
(2, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_040140 (E3E, chain A/B/C/D/E/F, )
2: VAR_040141 (S44F, chain A/B/C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_040140
K
12679
E
TITIN_HUMAN
Polymorphism
---
A/B/C/D/E/F
E
3
E
2
UniProt
VAR_040141
S
12720
F
TITIN_HUMAN
Unclassified
---
A/B/C/D/E/F
S
44
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1waaa_ (A:)
1b: SCOP_d1waae_ (E:)
1c: SCOP_d1waaf_ (F:)
1d: SCOP_d1waab_ (B:)
1e: SCOP_d1waac_ (C:)
1f: SCOP_d1waad_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
I set domains
(152)
Protein domain
:
automated matches
(23)
Human (Homo sapiens) [TaxId: 9606]
(22)
1a
d1waaa_
A:
1b
d1waae_
E:
1c
d1waaf_
F:
1d
d1waab_
B:
1e
d1waac_
C:
1f
d1waad_
D:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1waaC00 (C:-3-89)
1b: CATH_1waaD00 (D:-3-89)
1c: CATH_1waaA00 (A:-2-89)
1d: CATH_1waaB00 (B:1-89)
1e: CATH_1waaF00 (F:-3-89)
1f: CATH_1waaE00 (E:-3-88)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1waaC00
C:-3-89
1b
1waaD00
D:-3-89
1c
1waaA00
A:-2-89
1d
1waaB00
B:1-89
1e
1waaF00
F:-3-89
1f
1waaE00
E:-3-88
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (108 KB)
Header - Asym.Unit
Biol.Unit 1 (97 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1WAA
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help