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1W9T
Asym. Unit
Info
Asym.Unit (111 KB)
Biol.Unit 1 (54 KB)
Biol.Unit 2 (54 KB)
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(1)
Title
:
STRUCTURE OF A BETA-1,3-GLUCAN BINDING CBM6 FROM BACILLUS HALODURANS IN COMPLEX WITH XYLOBIOSE
Authors
:
A. B. Boraston, A. L. Van Bueren
Date
:
18 Oct 04 (Deposition) - 03 Nov 04 (Release) - 07 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.62
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Sugar-Binding Protein, Carbohydrate-Binding Module, Lectin, Beta-Glucan, Carbohydrate Binding, Glycoside Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
A. L. Van Bueren, C. Moreland, H. J. Gilbert, A. B. Boraston
Family 6 Carbohydrate Binding Modules Recognize The Non-Reducing End Of Beta-1, 3-Linked Glucans By Presenting A Unique Ligand Binding Surface
J. Biol. Chem. V. 280 530 2005
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
1c: SODIUM ION (NAc)
1d: SODIUM ION (NAd)
1e: SODIUM ION (NAe)
1f: SODIUM ION (NAf)
2a: BETA-D-XYLOPYRANOSE (XYPa)
2b: BETA-D-XYLOPYRANOSE (XYPb)
2c: BETA-D-XYLOPYRANOSE (XYPc)
2d: BETA-D-XYLOPYRANOSE (XYPd)
2e: BETA-D-XYLOPYRANOSE (XYPe)
2f: BETA-D-XYLOPYRANOSE (XYPf)
2g: BETA-D-XYLOPYRANOSE (XYPg)
2h: BETA-D-XYLOPYRANOSE (XYPh)
3a: XYLOPYRANOSE (XYSa)
3b: XYLOPYRANOSE (XYSb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NA
6
Ligand/Ion
SODIUM ION
2
XYP
8
Ligand/Ion
BETA-D-XYLOPYRANOSE
3
XYS
2
Ligand/Ion
XYLOPYRANOSE
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:32 , ASP A:33 , GLN A:100 , GLN A:101 , TRP A:102 , HOH A:2179 , HOH A:2180 , GLY B:97 , HOH B:2112 , HOH B:2135
BINDING SITE FOR RESIDUE XYS A1146
02
AC2
SOFTWARE
ASP A:34 , ARG A:66 , TRP A:102 , HOH A:2179 , HOH A:2180 , HOH A:2182 , HOH A:2183 , ASN B:10 , GLU B:13
BINDING SITE FOR RESIDUE XYP A1148
03
AC3
SOFTWARE
GLY A:97 , HOH A:2101 , HOH A:2133 , ASP B:32 , ASP B:33 , GLN B:100 , GLN B:101 , TRP B:102 , HOH B:2184
BINDING SITE FOR RESIDUE XYS B1146
04
AC4
SOFTWARE
ASN A:10 , GLU A:13 , ASP B:34 , ARG B:66 , TRP B:102 , HOH B:2184 , HOH B:2187 , HOH B:2188 , HOH B:2189
BINDING SITE FOR RESIDUE XYP B1148
05
AC5
SOFTWARE
GLN A:16 , GLU A:18 , ASP A:38 , ASN A:134 , HOH A:2034
BINDING SITE FOR RESIDUE NA A1141
06
AC6
SOFTWARE
GLY A:25 , TRP A:42 , ASN A:44 , ASP A:47 , THR B:84
BINDING SITE FOR RESIDUE NA A1142
07
AC7
SOFTWARE
ASP A:90 , HOH A:2054 , HOH A:2124 , HOH A:2149 , HOH A:2150
BINDING SITE FOR RESIDUE NA A1143
08
AC8
SOFTWARE
GLN B:16 , GLU B:18 , ASP B:38 , ASN B:134 , HOH B:2033
BINDING SITE FOR RESIDUE NA B1141
09
AC9
SOFTWARE
THR A:84 , GLY B:25 , TRP B:42 , ASN B:44 , ASP B:47
BINDING SITE FOR RESIDUE NA B1142
10
BC1
SOFTWARE
ASP B:90 , HOH B:2059 , HOH B:2060 , HOH B:2127 , HOH B:2150
BINDING SITE FOR RESIDUE NA B1143
11
BC2
SOFTWARE
ASP A:7 , GLU A:29 , GLY A:41 , TRP A:42 , TRP A:99 , ASP A:129 , ASN A:132 , HOH A:2172 , HOH A:2176 , HOH A:2177 , HOH A:2178
BINDING SITE FOR POLY-SACCHARIDE RESIDUES XYP A1144 THROUGH XYP A1145
12
BC3
SOFTWARE
ASP B:7 , GLU B:29 , GLY B:41 , TRP B:42 , ASP B:129 , ASN B:132 , HOH B:2002 , HOH B:2177 , HOH B:2181 , HOH B:2182 , HOH B:2183
BINDING SITE FOR POLY-SACCHARIDE RESIDUES XYP B1144 THROUGH XYP B1145
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1w9ta_ (A:)
1b: SCOP_d1w9tb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
Family 6 carbohydrate binding module, CBM6
(19)
Protein domain
:
Hypothetical protein BH0236
(3)
Bacillus halodurans [TaxId: 86665]
(3)
1a
d1w9ta_
A:
1b
d1w9tb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1w9tA00 (A:7-140)
1b: CATH_1w9tB00 (B:7-140)
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Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Bacillus halodurans. Organism_taxid: 86665.
(3)
1a
1w9tA00
A:7-140
1b
1w9tB00
B:7-140
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_CBM_6_1w9tB01 (B:16-140)
1b: PFAM_CBM_6_1w9tB02 (B:16-140)
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Clan
:
GBD
(153)
Family
:
CBM_6
(24)
Bacillus halodurans
(3)
1a
CBM_6-1w9tB01
B:16-140
1b
CBM_6-1w9tB02
B:16-140
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (111 KB)
Header - Asym.Unit
Biol.Unit 1 (54 KB)
Header - Biol.Unit 1
Biol.Unit 2 (54 KB)
Header - Biol.Unit 2
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