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1W9S
Biol. Unit 2
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Asym.Unit (106 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (52 KB)
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(1)
Title
:
STRUCTURE OF A BETA-1,3-GLUCAN BINDING CBM6 FROM BACILLUS HALODURANS
Authors
:
A. B. Boraston, A. L. Van Bueren
Date
:
18 Oct 04 (Deposition) - 03 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.59
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Carbohydrate-Binding Module, Lectin, Beta-Glucan, Carbohydrate Binding, Glycoside Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. L. Van Bueren, C. Moreland, H. J. Gilbert, A. B. Boraston
Family 6 Carbohydrate Binding Modules Recognize The Non-Reducing End Of Beta-1, 3-Linked Glucans By Presenting A Unique Ligand Binding Surface
J. Biol. Chem. V. 280 530 2005
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
2e: SODIUM ION (NAe)
2f: SODIUM ION (NAf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
NA
-1
Ligand/Ion
SODIUM ION
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Sites
(5, 5)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
GLY A:25 , TRP A:42 , ASN A:44 , ASP A:47 , THR B:84
BINDING SITE FOR RESIDUE NA A1142
2
AC4
SOFTWARE
GLN B:16 , GLU B:18 , ASP B:38 , ASN B:134 , HOH B:2037
BINDING SITE FOR RESIDUE NA B1141
3
AC5
SOFTWARE
THR A:84 , GLY B:25 , TRP B:42 , ASN B:44 , ASP B:47
BINDING SITE FOR RESIDUE NA B1142
4
AC6
SOFTWARE
ASP B:90 , HOH B:2062 , HOH B:2127 , HOH B:2149 , HOH B:2150
BINDING SITE FOR RESIDUE NA B1143
5
AC8
SOFTWARE
GLU B:29 , GLY B:41 , TRP B:42 , TRP B:99 , ASP B:129 , ASN B:132 , HOH B:2065 , HOH B:2173
BINDING SITE FOR RESIDUE GOL B1144
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1w9sa_ (A:)
1b: SCOP_d1w9sb_ (B:)
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Protein Domains
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)
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
Family 6 carbohydrate binding module, CBM6
(19)
Protein domain
:
Hypothetical protein BH0236
(3)
Bacillus halodurans [TaxId: 86665]
(3)
1a
d1w9sa_
A:
1b
d1w9sb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1w9sA00 (A:7-140)
1b: CATH_1w9sB00 (B:7-140)
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)
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)
Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Bacillus halodurans. Organism_taxid: 86665.
(3)
1a
1w9sA00
A:7-140
1b
1w9sB00
B:7-140
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_CBM_6_1w9sB01 (B:16-140)
1b: PFAM_CBM_6_1w9sB02 (B:16-140)
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)
(
)
Clan
:
GBD
(153)
Family
:
CBM_6
(24)
Bacillus halodurans
(3)
1a
CBM_6-1w9sB01
B:16-140
1b
CBM_6-1w9sB02
B:16-140
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (106 KB)
Header - Asym.Unit
Biol.Unit 1 (52 KB)
Header - Biol.Unit 1
Biol.Unit 2 (52 KB)
Header - Biol.Unit 2
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