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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
1W98
Asym. Unit
Info
Asym.Unit (115 KB)
Biol.Unit 1 (104 KB)
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(1)
Title
:
THE STRUCTURAL BASIS OF CDK2 ACTIVATION BY CYCLIN E
Authors
:
E. D. Lowe, R. Honda, E. Dubinina, V. Skamnaki, A. Cook, L. N. Johnson
Date
:
07 Oct 04 (Deposition) - 02 Feb 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cell Cycle, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Honda, E. D. Lowe, E. Dubinina, V. Skamnaki, A. Cook, N. Brown, L. N. Johnson
The Structure Of Cyclin E1/Cdk2: Implications For Cdk2 Activation And Cdk2-Independent Roles
Embo J. V. 24 452 2005
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: PHOSPHOTHREONINE (TPOa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_016157 (Y15S, chain A, )
2: VAR_053927 (V18L, chain A, )
3: VAR_041972 (P45L, chain A, )
4: VAR_019988 (T290S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016157
Y
15
S
CDK2_HUMAN
Polymorphism
3087335
A
Y
15
S
2
UniProt
VAR_053927
V
18
L
CDK2_HUMAN
Polymorphism
11554376
A
V
18
L
3
UniProt
VAR_041972
P
45
L
CDK2_HUMAN
Unclassified
---
A
P
45
L
4
UniProt
VAR_019988
T
290
S
CDK2_HUMAN
Polymorphism
2069413
A
T
290
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:10-33)
2: PROTEIN_KINASE_ST (A:123-135)
3: CYCLINS (B:130-161)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
CDK2_HUMAN
10-33
1
A:10-33
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
CDK2_HUMAN
123-135
1
A:123-135
3
CYCLINS
PS00292
Cyclins signature.
CCNE1_HUMAN
145-176
1
B:130-161
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Exons
(15, 15)
Info
All Exons
Exon 1.5 (B:88-94)
Exon 1.6 (B:94-139)
Exon 1.7a (B:140-188)
Exon 1.8 (B:189-220)
Exon 1.9 (B:221-265)
Exon 1.10 (B:266-303)
Exon 1.11 (B:303-355)
Exon 1.12 (B:356-357)
Exon 2.1 (A:1-39)
Exon 2.2 (A:39-65)
Exon 2.3 (A:65-105)
Exon 2.4 (A:106-162)
Exon 2.5 (A:163-196)
Exon 2.6 (A:197-264)
Exon 2.7 (A:265-297)
View:
Select:
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All Exon Boundaries
01: Boundary 1.4/1.5
02: Boundary 1.5/1.6
03: Boundary 1.6/1.7a
04: Boundary 1.7a/1.8
05: Boundary 1.8/1.9
06: Boundary 1.9/1.10
07: Boundary 1.10/1.11
08: Boundary 1.11/1.12
09: Boundary 1.12/-
10: Boundary -/2.1
11: Boundary 2.1/2.2
12: Boundary 2.2/2.3
13: Boundary 2.3/2.4
14: Boundary 2.4/2.5
15: Boundary 2.5/2.6
16: Boundary 2.6/2.7
17: Boundary 2.7/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000262643
1
ENSE00001262604
chr19:
30302901-30303059
159
CCNE1_HUMAN
-
0
0
-
-
1.2
ENST00000262643
2
ENSE00001101798
chr19:
30303439-30303485
47
CCNE1_HUMAN
1-8
8
0
-
-
1.3b
ENST00000262643
3b
ENSE00000995804
chr19:
30303596-30303683
88
CCNE1_HUMAN
8-37
30
0
-
-
1.4
ENST00000262643
4
ENSE00000694528
chr19:
30303876-30303944
69
CCNE1_HUMAN
38-60
23
0
-
-
1.5
ENST00000262643
5
ENSE00000694530
chr19:
30308044-30308189
146
CCNE1_HUMAN
61-109
49
1
B:88-94
7
1.6
ENST00000262643
6
ENSE00000694534
chr19:
30308313-30308448
136
CCNE1_HUMAN
109-154
46
1
B:94-139
46
1.7a
ENST00000262643
7a
ENSE00000694536
chr19:
30311609-30311755
147
CCNE1_HUMAN
155-203
49
1
B:140-188
49
1.8
ENST00000262643
8
ENSE00000694538
chr19:
30312629-30312724
96
CCNE1_HUMAN
204-235
32
1
B:189-220
32
1.9
ENST00000262643
9
ENSE00000694540
chr19:
30312903-30313037
135
CCNE1_HUMAN
236-280
45
1
B:221-265
45
1.10
ENST00000262643
10
ENSE00000694542
chr19:
30313147-30313258
112
CCNE1_HUMAN
281-318
38
1
B:266-303
38
1.11
ENST00000262643
11
ENSE00000694544
chr19:
30313353-30313510
158
CCNE1_HUMAN
318-370
53
1
B:303-355
53
1.12
ENST00000262643
12
ENSE00001101802
chr19:
30314562-30315216
655
CCNE1_HUMAN
371-410
40
1
B:356-357
2
2.1
ENST00000266970
1
ENSE00001301614
chr12:
56360556-56360908
353
CDK2_HUMAN
1-39
39
1
A:1-39
39
2.2
ENST00000266970
2
ENSE00000838625
chr12:
56361641-56361718
78
CDK2_HUMAN
39-65
27
1
A:39-65
27
2.3
ENST00000266970
3
ENSE00000838626
chr12:
56361833-56361953
121
CDK2_HUMAN
65-105
41
1
A:65-105
41
2.4
ENST00000266970
4
ENSE00000838629
chr12:
56362562-56362732
171
CDK2_HUMAN
106-162
57
1
A:106-162
57
2.5
ENST00000266970
5
ENSE00001704611
chr12:
56363259-56363360
102
CDK2_HUMAN
163-196
34
1
A:163-196
34
2.6
ENST00000266970
6
ENSE00000938649
chr12:
56364828-56365031
204
CDK2_HUMAN
197-264
68
1
A:197-264
68
2.7
ENST00000266970
7
ENSE00001215687
chr12:
56365305-56366565
1261
CDK2_HUMAN
265-298
34
1
A:265-297
33
[
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]
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1w98b1 (B:228-357)
1b: SCOP_d1w98b2 (B:88-227)
2a: SCOP_d1w98a_ (A:)
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Classes
(
)
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(
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)
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)
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cyclin-like
(137)
Superfamily
:
Cyclin-like
(137)
Family
:
Cyclin
(117)
Protein domain
:
G1/S-specific cyclin-E1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1w98b1
B:228-357
1b
d1w98b2
B:88-227
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Cyclin-dependent PK, CDK2
(340)
Human (Homo sapiens) [TaxId: 9606]
(336)
2a
d1w98a_
A:
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CATH Domains
(3, 4)
Info
all CATH domains
1a: CATH_1w98A01 (A:0-84)
2a: CATH_1w98B02 (B:114-227)
2b: CATH_1w98B01 (B:97-113,B:228-357)
3a: CATH_1w98A02 (A:85-295)
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(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
1w98A01
A:0-84
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cyclin A; domain 1
(136)
Homologous Superfamily
:
[code=1.10.472.10, no name defined]
(99)
Human (Homo sapiens)
(84)
2a
1w98B02
B:114-227
2b
1w98B01
B:97-113,B:228-357
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
3a
1w98A02
A:85-295
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_Cyclin_C_1w98B01 (B:229-351)
2a: PFAM_Cyclin_N_1w98B02 (B:100-227)
3a: PFAM_Pkinase_1w98A01 (A:4-286)
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Cyclin
(63)
Family
:
Cyclin_C
(40)
Homo sapiens (Human)
(36)
1a
Cyclin_C-1w98B01
B:229-351
Family
:
Cyclin_N
(51)
Homo sapiens (Human)
(43)
2a
Cyclin_N-1w98B02
B:100-227
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
3a
Pkinase-1w98A01
A:4-286
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Asymmetric Unit 1
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