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1W91
Biol. Unit 1
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Asym.Unit (708 KB)
Biol.Unit 1 (361 KB)
Biol.Unit 2 (362 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 1,4-BETA-D-XYLAN XYLOHYDROLASE SOLVE USING ANOMALOUS SIGNAL FROM SELENIOMETHIONINE
Authors
:
J. Jakoncic, G. Shoham, V. Stojanoff
Date
:
05 Oct 04 (Deposition) - 01 Feb 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Xylosidase, Mad, Semet, Tetramer, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. Jakoncic, G. Shoham, V. Stojanoff
Crystal Structure Of 1, 4-Beta-D-Xylan Xylohydrolase From Geobacillus Stearothermophilus.
To Be Published
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F39 (A:153-162,B:153-162,C:153-162,D:15...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F39
PS01027
Glycosyl hydrolases family 39 active site.
XYNB_GEOSE
153-162
4
A:153-162
B:153-162
C:153-162
D:153-162
-
-
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d1w91a1 (A:4-13,A:361-502)
1b: SCOP_d1w91b1 (B:4-13,B:361-502)
1c: SCOP_d1w91c1 (C:4-13,C:361-502)
1d: SCOP_d1w91d1 (D:4-13,D:361-502)
1e: SCOP_d1w91e1 (E:4-13,E:361-502)
1f: SCOP_d1w91f1 (F:4-13,F:361-502)
1g: SCOP_d1w91g1 (G:4-13,G:361-502)
1h: SCOP_d1w91h1 (H:4-13,H:361-502)
2a: SCOP_d1w91a2 (A:14-360)
2b: SCOP_d1w91b2 (B:14-360)
2c: SCOP_d1w91c2 (C:14-360)
2d: SCOP_d1w91d2 (D:14-360)
2e: SCOP_d1w91e2 (E:14-360)
2f: SCOP_d1w91f2 (F:14-360)
2g: SCOP_d1w91g2 (G:14-360)
2h: SCOP_d1w91h2 (H:14-360)
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Protein Domains
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)
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)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
(30)
Protein domain
:
Beta-D-xylosidase
(5)
Bacillus stearothermophilus [TaxId: 1422]
(3)
1a
d1w91a1
A:4-13,A:361-502
1b
d1w91b1
B:4-13,B:361-502
1c
d1w91c1
C:4-13,C:361-502
1d
d1w91d1
D:4-13,D:361-502
1e
d1w91e1
E:4-13,E:361-502
1f
d1w91f1
F:4-13,F:361-502
1g
d1w91g1
G:4-13,G:361-502
1h
d1w91h1
H:4-13,H:361-502
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
Beta-D-xylosidase, catalytic domain
(5)
Bacillus stearothermophilus [TaxId: 1422]
(3)
2a
d1w91a2
A:14-360
2b
d1w91b2
B:14-360
2c
d1w91c2
C:14-360
2d
d1w91d2
D:14-360
2e
d1w91e2
E:14-360
2f
d1w91f2
F:14-360
2g
d1w91g2
G:14-360
2h
d1w91h2
H:14-360
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1w91A02 (A:15-359)
1b: CATH_1w91H02 (H:15-359)
1c: CATH_1w91B02 (B:15-359)
1d: CATH_1w91C02 (C:15-359)
1e: CATH_1w91D02 (D:15-359)
1f: CATH_1w91E02 (E:15-359)
1g: CATH_1w91F02 (F:15-359)
1h: CATH_1w91G02 (G:15-359)
2a: CATH_1w91A01 (A:4-14,A:360-482)
2b: CATH_1w91B01 (B:4-14,B:360-482)
2c: CATH_1w91C01 (C:4-14,C:360-482)
2d: CATH_1w91D01 (D:4-14,D:360-482)
2e: CATH_1w91E01 (E:4-14,E:360-482)
2f: CATH_1w91F01 (F:4-14,F:360-482)
2g: CATH_1w91G01 (G:4-14,G:360-482)
2h: CATH_1w91H01 (H:4-14,H:360-482)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
[unclassified]
(3)
1a
1w91A02
A:15-359
1b
1w91H02
H:15-359
1c
1w91B02
B:15-359
1d
1w91C02
C:15-359
1e
1w91D02
D:15-359
1f
1w91E02
E:15-359
1g
1w91F02
F:15-359
1h
1w91G02
G:15-359
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Glycosyl hydrolase domain; family 39
(5)
[unclassified]
(1)
2a
1w91A01
A:4-14,A:360-482
2b
1w91B01
B:4-14,B:360-482
2c
1w91C01
C:4-14,C:360-482
2d
1w91D01
D:4-14,D:360-482
2e
1w91E01
E:4-14,E:360-482
2f
1w91F01
F:4-14,F:360-482
2g
1w91G01
G:4-14,G:360-482
2h
1w91H01
H:4-14,H:360-482
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_39_1w91H01 (H:4-483)
1b: PFAM_Glyco_hydro_39_1w91H02 (H:4-483)
1c: PFAM_Glyco_hydro_39_1w91H03 (H:4-483)
1d: PFAM_Glyco_hydro_39_1w91H04 (H:4-483)
1e: PFAM_Glyco_hydro_39_1w91H05 (H:4-483)
1f: PFAM_Glyco_hydro_39_1w91H06 (H:4-483)
1g: PFAM_Glyco_hydro_39_1w91H07 (H:4-483)
1h: PFAM_Glyco_hydro_39_1w91H08 (H:4-483)
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Clan
:
Glyco_hydro_tim
(488)
Family
:
Glyco_hydro_39
(2)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(1)
1a
Glyco_hydro_39-1w91H01
H:4-483
1b
Glyco_hydro_39-1w91H02
H:4-483
1c
Glyco_hydro_39-1w91H03
H:4-483
1d
Glyco_hydro_39-1w91H04
H:4-483
1e
Glyco_hydro_39-1w91H05
H:4-483
1f
Glyco_hydro_39-1w91H06
H:4-483
1g
Glyco_hydro_39-1w91H07
H:4-483
1h
Glyco_hydro_39-1w91H08
H:4-483
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Asym.Unit (708 KB)
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