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1W8H
Asym. Unit
Info
Asym.Unit (92 KB)
Biol.Unit 1 (83 KB)
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(1)
Title
:
STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL) COMPLEXED WITH LEWISA TRISACCHARIDE
Authors
:
S. Perret, C. Sabin, C. Dumon, M. Budova, C. Gautier, O. Galanina, S. Ili N. Bovin, M. Nicaise, M. Desmadril, N. Gilboa-Garber, M. Wimmerova, E. P. Mitchell, A. Imberty
Date
:
21 Sep 04 (Deposition) - 31 Mar 05 (Release) - 30 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Sugar Binding Protein, Lectin, Sugar, Lewis A, Cystic Fibrosis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Perret, C. Sabin, C. Dumon, M. Pokorna, C. Gautier, O. Galanina, S. Ilia, N. Bovin, M. Nicaise, M. Desmadril, N. Gilboa-Garber, M. Wimmerova, E. P. Mitchell, A. Imberty
Structural Basis For The Interaction Between Human Milk Oligosaccharides And The Bacterial Lectin Pa-Iil Of Pseudomonas Aeruginosa.
Biochem. J. V. 389 325 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(7, 29)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
2c: ALPHA-L-FUCOSE (FUCc)
2d: ALPHA-L-FUCOSE (FUCd)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
3c: BETA-D-GALACTOSE (GALc)
3d: BETA-D-GALACTOSE (GALd)
4a: GLYCEROL; PROPANE-1,2,3-TRIOL (GOLa)
4b: GLYCEROL; PROPANE-1,2,3-TRIOL (GOLb)
4c: GLYCEROL; PROPANE-1,2,3-TRIOL (GOLc)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
6b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
6c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
6d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
8
Ligand/Ion
CALCIUM ION
2
FUC
4
Ligand/Ion
ALPHA-L-FUCOSE
3
GAL
4
Ligand/Ion
BETA-D-GALACTOSE
4
GOL
3
Ligand/Ion
GLYCEROL; PROPANE-1,2,3-TRIOL
5
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
NDG
4
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
7
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:21 , ASP A:101 , ASN A:103 , ASP A:104 , FUC A:331 , GLY D:114
BINDING SITE FOR RESIDUE CA A 201
02
AC2
SOFTWARE
GLU A:95 , ASP A:99 , ASP A:101 , ASP A:104 , FUC A:331
BINDING SITE FOR RESIDUE CA A 202
03
AC3
SOFTWARE
HOH A:2126 , HOH A:2127 , SER C:44 , ASN C:46 , ALA C:48 , SER D:44 , THR D:45 , ASN D:46 , HOH D:2035
BINDING SITE FOR RESIDUE SO4 A 400
04
AC4
SOFTWARE
ALA A:38 , THR A:39 , GLN A:53 , HOH A:2129 , HOH A:2130 , ASN C:70
BINDING SITE FOR RESIDUE SO4 A 401
05
AC5
SOFTWARE
ASN B:21 , ASP B:101 , ASN B:103 , ASP B:104 , FUC B:331 , GLY C:114
BINDING SITE FOR RESIDUE CA B 203
06
AC6
SOFTWARE
GLU B:95 , ASP B:99 , ASP B:101 , ASP B:104 , FUC B:331
BINDING SITE FOR RESIDUE CA B 204
07
AC7
SOFTWARE
GLU C:95 , ASP C:99 , ASP C:101 , ASP C:104 , FUC C:331
BINDING SITE FOR RESIDUE CA C 205
08
AC8
SOFTWARE
GLY B:114 , ASN C:21 , ASP C:101 , ASN C:103 , ASP C:104 , FUC C:331
BINDING SITE FOR RESIDUE CA C 206
09
AC9
SOFTWARE
GLY A:114 , ASN D:21 , ASP D:101 , ASN D:103 , ASP D:104 , FUC D:331
BINDING SITE FOR RESIDUE CA D 207
10
BC1
SOFTWARE
GLU D:95 , ASP D:99 , ASP D:101 , ASP D:104 , FUC D:331
BINDING SITE FOR RESIDUE CA D 208
11
BC2
SOFTWARE
HOH A:2131 , HOH A:2132 , THR C:2 , GLN C:3 , HOH C:2002
BINDING SITE FOR RESIDUE GOL A 614
12
BC3
SOFTWARE
ALA C:38 , THR C:39 , PHE C:40 , GLN C:53 , HOH C:2107 , ILE D:50 , GLY D:51 , THR D:52
BINDING SITE FOR RESIDUE GOL C 615
13
BC4
SOFTWARE
ALA B:1 , GLN B:3 , LEU B:76 , ALA D:1 , GLN D:3 , LEU D:76 , HOH D:2060
BINDING SITE FOR RESIDUE GOL D 616
14
BC5
SOFTWARE
ASN A:21 , SER A:22 , SER A:23 , GLU A:95 , ASP A:96 , ASP A:99 , ASP A:101 , ASP A:104 , CA A:201 , CA A:202 , GAL A:333 , HOH A:2108 , HOH A:2119 , HOH A:2121 , HOH A:2123 , HOH A:2124 , HOH A:2125 , GLY D:114
BINDING SITE FOR RESIDUES FUC A 331 AND NAG A 332
15
BC6
SOFTWARE
ASN A:21 , SER A:22 , SER A:23 , GLU A:95 , ASP A:96 , ASP A:99 , ASP A:101 , ASP A:104 , CA A:201 , CA A:202 , NAG A:332 , GAL A:333 , HOH A:2108 , GLY D:114
BINDING SITE FOR RESIDUES FUC A 331 AND NDG A 335
16
BC7
SOFTWARE
SER A:23 , ASP A:96 , ASP A:99 , FUC A:331 , HOH A:2108 , HOH A:2119 , HOH A:2121 , HOH A:2122 , HOH A:2123 , HOH A:2124 , HOH A:2125
BINDING SITE FOR RESIDUES NAG A 332 AND GAL A 333
17
BC8
SOFTWARE
ASP A:99 , FUC A:331 , NAG A:332 , HOH A:2121 , HOH A:2122
BINDING SITE FOR RESIDUES GAL A 333 AND NDG A 335
18
BC9
SOFTWARE
ASN B:21 , SER B:22 , SER B:23 , GLU B:95 , ASP B:96 , ASP B:99 , ASP B:101 , ASP B:104 , CA B:203 , CA B:204 , NAG B:332 , GAL B:333 , GLY C:114
BINDING SITE FOR RESIDUES FUC B 331 AND NDG B 335
19
CC1
SOFTWARE
ASN B:21 , SER B:22 , SER B:23 , GLU B:95 , ASP B:96 , ASP B:99 , ASP B:101 , ASP B:104 , CA B:203 , CA B:204 , GAL B:333 , HOH B:2099 , HOH B:2100 , HOH B:2103 , HOH B:2106 , GLY C:114
BINDING SITE FOR RESIDUES FUC B 331 AND NAG B 332
20
CC2
SOFTWARE
SER B:23 , ASP B:96 , THR B:98 , ASP B:99 , FUC B:331 , HOH B:2099 , HOH B:2100 , HOH B:2101 , HOH B:2102 , HOH B:2103 , HOH B:2106 , GAL C:333
BINDING SITE FOR RESIDUES NAG B 332 AND GAL B 333
21
CC3
SOFTWARE
THR B:98 , ASP B:99 , FUC B:331 , NAG B:332 , HOH B:2100 , HOH B:2101 , HOH B:2102 , HOH B:2103 , GAL C:333
BINDING SITE FOR RESIDUES GAL B 333 AND NDG B 335
22
CC4
SOFTWARE
GLY B:114 , ASN C:21 , SER C:22 , SER C:23 , GLU C:95 , ASP C:96 , ASP C:99 , ASP C:101 , ASP C:104 , CA C:205 , CA C:206 , NAG C:332 , GAL C:333
BINDING SITE FOR RESIDUES FUC C 331 AND NDG C 335
23
CC5
SOFTWARE
GLY B:114 , ASN C:21 , SER C:22 , SER C:23 , GLU C:95 , ASP C:96 , ASP C:99 , ASP C:101 , ASP C:104 , CA C:205 , CA C:206 , GAL C:333 , HOH C:2101 , HOH C:2102 , HOH C:2103 , HOH C:2105
BINDING SITE FOR RESIDUES FUC C 331 AND NAG C 332
24
CC6
SOFTWARE
GAL B:333 , HOH B:2106 , SER C:23 , ASP C:96 , ASP C:99 , FUC C:331 , HOH C:2101 , HOH C:2102 , HOH C:2103 , HOH C:2104 , HOH C:2105
BINDING SITE FOR RESIDUES NAG C 332 AND GAL C 333
25
CC7
SOFTWARE
GAL B:333 , HOH B:2106 , ASP C:99 , FUC C:331 , NAG C:332 , HOH C:2104 , HOH C:2105
BINDING SITE FOR RESIDUES GAL C 333 AND NDG C 335
26
CC8
SOFTWARE
GLY A:114 , ASN D:21 , SER D:22 , SER D:23 , GLU D:95 , ASP D:96 , GLY D:97 , ASP D:99 , ASP D:101 , ASP D:104 , CA D:207 , CA D:208 , GAL D:333 , HOH D:2021 , HOH D:2079 , HOH D:2089 , HOH D:2090
BINDING SITE FOR RESIDUES FUC D 331 AND NDG D 332
27
CC9
SOFTWARE
GLY A:114 , ASN D:21 , SER D:22 , SER D:23 , GLU D:95 , ASP D:96 , ASP D:99 , ASP D:101 , ASP D:104 , CA D:207 , CA D:208 , NDG D:332 , GAL D:333 , HOH D:2079
BINDING SITE FOR RESIDUES FUC D 331 AND NAG D 335
28
DC1
SOFTWARE
ASP D:96 , GLY D:97 , ASP D:99 , FUC D:331 , HOH D:2021 , HOH D:2089 , HOH D:2090 , HOH D:2091 , HOH D:2092 , HOH D:2093
BINDING SITE FOR RESIDUES NDG D 332 AND GAL D 333
29
DC2
SOFTWARE
ASP D:99 , FUC D:331 , NDG D:332 , HOH D:2021 , HOH D:2091 , HOH D:2092 , HOH D:2093
BINDING SITE FOR RESIDUES GAL D 333 AND NAG D 335
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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Label:
All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1w8ha_ (A:)
1b: SCOP_d1w8hb_ (B:)
1c: SCOP_d1w8hc_ (C:)
1d: SCOP_d1w8hd_ (D:)
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(
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(
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Calcium-mediated lectin
(32)
Superfamily
:
Calcium-mediated lectin
(32)
Family
:
Calcium-mediated lectin
(25)
Protein domain
:
automated matches
(14)
Pseudomonas aeruginosa [TaxId: 287]
(12)
1a
d1w8ha_
A:
1b
d1w8hb_
B:
1c
d1w8hc_
C:
1d
d1w8hd_
D:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1w8hA00 (A:1-114)
1b: CATH_1w8hB00 (B:1-114)
1c: CATH_1w8hC00 (C:1-114)
1d: CATH_1w8hD00 (D:1-114)
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(
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Topologies
(
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Calcium-mediated lectin
(24)
Pseudomonas aeruginosa. Organism_taxid: 287.
(9)
1a
1w8hA00
A:1-114
1b
1w8hB00
B:1-114
1c
1w8hC00
C:1-114
1d
1w8hD00
D:1-114
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_PA_IIL_1w8hD01 (D:6-113)
1b: PFAM_PA_IIL_1w8hD02 (D:6-113)
1c: PFAM_PA_IIL_1w8hD03 (D:6-113)
1d: PFAM_PA_IIL_1w8hD04 (D:6-113)
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Clans
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(
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Families
(
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(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: PA-IIL]
(21)
Family
:
PA-IIL
(21)
Pseudomonas aeruginosa
(17)
1a
PA-IIL-1w8hD01
D:6-113
1b
PA-IIL-1w8hD02
D:6-113
1c
PA-IIL-1w8hD03
D:6-113
1d
PA-IIL-1w8hD04
D:6-113
[
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]
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