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1W87
Asym. Unit
Info
Asym.Unit (107 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (52 KB)
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(1)
Title
:
FERREDOXIN-NADP REDUCTASE (MUTATION: Y 303 W) COMPLEXED WITH NADP BY COCRYSTALLIZATION
Authors
:
J. A. Hermoso, I. Perez-Dorado, C. Maya
Date
:
16 Sep 04 (Deposition) - 19 Oct 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oxidoreductase, 3D-Structure, Fad, Flavoprotein, Fnr, Nadp, Nadp Reductase, Phycobilisome, Thylakoid
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. Tejero, I. Perez-Dorado, C. Maya, M. M. Julvez, J. Sanz-Aparicio, C. Gomez-Moreno, J. A. Hermoso, M. Medina
C-Terminal Tyrosine Of Ferredoxin-Nadp(+) Reductase In Hydride Transfer Processes With Nad(P)(+)/H.
Biochemistry V. 44 13477 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
NAP
2
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:77 , LEU A:78 , TYR A:79 , SER A:80 , CYS A:98 , ARG A:100 , LEU A:102 , TYR A:104 , PRO A:107 , GLY A:115 , VAL A:116 , CYS A:117 , SER A:118 , THR A:157 , GLU A:301 , TRP A:303 , LYS B:105 , FAD B:304
BINDING SITE FOR RESIDUE FAD A 304
2
AC2
SOFTWARE
ARG A:100 , LEU A:102 , THR A:155 , GLY A:156 , THR A:157 , VAL A:193 , PRO A:194 , SER A:223 , ARG A:224 , ARG A:233 , TYR A:235 , GLN A:237 , GLY A:262 , LEU A:263 , GLY A:265 , TRP A:303 , LYS B:105 , GLY B:110 , THR B:112
BINDING SITE FOR RESIDUE NAP A 305
3
AC3
SOFTWARE
LYS A:105 , PRO A:107 , FAD A:304 , ARG B:77 , LEU B:78 , TYR B:79 , SER B:80 , CYS B:98 , VAL B:99 , ARG B:100 , LEU B:102 , TYR B:104 , PRO B:107 , GLY B:115 , VAL B:116 , CYS B:117 , SER B:118 , THR B:157 , TRP B:303
BINDING SITE FOR RESIDUE FAD B 304
4
AC4
SOFTWARE
LYS A:105 , GLU A:111 , THR A:112 , ARG B:100 , LEU B:102 , THR B:155 , THR B:157 , VAL B:193 , PRO B:194 , SER B:223 , ARG B:224 , ARG B:233 , TYR B:235 , GLN B:237 , GLY B:262 , LEU B:263 , TRP B:303
BINDING SITE FOR RESIDUE NAP B 305
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: FAD_FR (A:18-142,B:18-142)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FAD_FR
PS51384
Ferredoxin reductase-type FAD binding domain profile.
FENR_NOSSO
155-279
2
A:18-142
B:18-142
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1w87a1 (A:9-141)
1b: SCOP_d1w87b1 (B:9-141)
2a: SCOP_d1w87a2 (A:142-303)
2b: SCOP_d1w87b2 (B:142-303)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Riboflavin synthase domain-like
(130)
Family
:
Ferredoxin reductase FAD-binding domain-like
(72)
Protein domain
:
automated matches
(11)
Anabaena sp. [TaxId: 1168]
(3)
1a
d1w87a1
A:9-141
1b
d1w87b1
B:9-141
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Superfamily
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Family
:
Reductases
(68)
Protein domain
:
automated matches
(15)
Anabaena sp. [TaxId: 1168]
(3)
2a
d1w87a2
A:142-303
2b
d1w87b2
B:142-303
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1w87A02 (A:137-303)
1b: CATH_1w87B02 (B:137-303)
2a: CATH_1w87A01 (A:9-136)
2b: CATH_1w87B01 (B:9-136)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module
(85)
Anabaena sp.. Cyanobacterium anabaena. Organism_taxid: 1168. Strain: pcc 7119.
(2)
1a
1w87A02
A:137-303
1b
1w87B02
B:137-303
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
Anabaena sp.. Cyanobacterium anabaena. Organism_taxid: 1168. Strain: pcc 7119.
(2)
2a
1w87A01
A:9-136
2b
1w87B01
B:9-136
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (107 KB)
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