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1W80
Asym. Unit
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Asym.Unit (56 KB)
Biol.Unit 1 (51 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ALPHA-ADAPTIN APPENDAGE DOMAIN, FROM THE AP2 ADAPTOR COMPLEX, BOUND TO 2 PEPTIDES FROM SYNAPTOJANIN170
Authors
:
M. G. J. Ford, G. J. K. Praefcke, H. T. Mcmahon
Date
:
14 Sep 04 (Deposition) - 27 Oct 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,P,Q
Biol. Unit 1: A,P,Q (1x)
Keywords
:
Endocytosis/Exocytosis, Endocytosis, Alpha-Adaptin Appendage, Adaptor Complex, Ap2, Synaptojanin, Exocytosis, Lipid-Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
G. J. K. Praefcke, M. G. J. Ford, E. M. Schmid, L. E. Olesen, J. L. Gallop, S. -Y. Peak-Chew, Y. Vallis, M. M. Babu, I. G. Mills, H. T. Mcmahon
Evolving Nature Of The Ap2 Alpha-Appendage Hub During Clathrin-Coated Vesicle Endocytosis.
Embo J. V. 23 4371 2004
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: BENZAMIDINE (BENa)
2a: CARBONATE ION (CO3a)
2b: CARBONATE ION (CO3b)
2c: CARBONATE ION (CO3c)
3a: DITHIANE DIOL (DTDa)
4a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BEN
1
Ligand/Ion
BENZAMIDINE
2
CO3
3
Ligand/Ion
CARBONATE ION
3
DTD
1
Ligand/Ion
DITHIANE DIOL
4
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:731 , LYS A:841 , ARG A:920 , LYS Q:5
BINDING SITE FOR RESIDUE CO3 A1940
2
AC2
SOFTWARE
ARG A:731 , GLN A:732
BINDING SITE FOR RESIDUE CO3 A1941
3
AC3
SOFTWARE
ASN A:719 , GLN A:720 , HOH A:2262
BINDING SITE FOR RESIDUE CO3 A1942
4
AC4
SOFTWARE
GLY A:700 , SER A:701 , GLU A:702 , ASP A:703 , HOH A:2263
BINDING SITE FOR RESIDUE SO4 A1944
5
AC5
SOFTWARE
ARG A:839 , HIS A:858 , PRO A:859 , GLY A:891 , GLY A:901 , CYS A:902 , LEU A:903 , HOH A:2159 , HOH A:2261
BINDING SITE FOR RESIDUE BEN A1939
6
AC6
SOFTWARE
GLU A:729 , GLY A:735 , GLU A:849 , HOH A:2059 , HOH Q:2003
BINDING SITE FOR RESIDUE DTD A1943
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1w80a1 (A:694-824)
2a: SCOP_d1w80a2 (A:825-938)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Clathrin adaptor appendage domain
(28)
Family
:
Alpha-adaptin ear subdomain-like
(14)
Protein domain
:
Alpha-adaptin AP2 ear domain, N-terminal subdomain
(10)
Mouse (Mus musculus) [TaxId: 10090]
(10)
1a
d1w80a1
A:694-824
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Subdomain of clathrin and coatomer appendage domain
(16)
Superfamily
:
Subdomain of clathrin and coatomer appendage domain
(16)
Family
:
Clathrin adaptor appendage, alpha and beta chain-specific domain
(14)
Protein domain
:
Alpa-adaptin AP2, C-terminal subdomain
(10)
Mouse (Mus musculus) [TaxId: 10090]
(10)
2a
d1w80a2
A:825-938
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1w80A02 (A:826-938)
2a: CATH_1w80A01 (A:702-825)
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)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
TATA-Binding Protein
(118)
Homologous Superfamily
:
[code=3.30.310.30, no name defined]
(13)
Mouse (Mus musculus)
(3)
1a
1w80A02
A:826-938
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1030, no name defined]
(11)
Mouse (Mus musculus)
(3)
2a
1w80A01
A:702-825
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Alpha_adaptinC2_1w80A01 (A:712-819)
2a: PFAM_Alpha_adaptin_C_1w80A02 (A:825-933)
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Clan
:
E-set
(290)
Family
:
Alpha_adaptinC2
(13)
Mus musculus (Mouse)
(9)
1a
Alpha_adaptinC2-1w80A01
A:712-819
Clan
:
no clan defined [family: Alpha_adaptin_C]
(9)
Family
:
Alpha_adaptin_C
(9)
Mus musculus (Mouse)
(9)
2a
Alpha_adaptin_C-1w80A02
A:825-933
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Asymmetric Unit 1
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