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1W6U
Asym. Unit
Info
Asym.Unit (201 KB)
Biol.Unit 1 (193 KB)
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(1)
Title
:
STRUCTURE OF HUMAN DECR TERNARY COMPLEX
Authors
:
M. S. Alphey, E. Byres, D. Li, W. N. Hunter
Date
:
24 Aug 04 (Deposition) - 28 Oct 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Dienoyl Coa-Reductase, Short Chain Dehydrogenase, Beta- Oxidation, Nadp, Oxidoreductase, Reductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. S. Alphey, W. Yu, E. Byres, D. Li, W. N. Hunter
Structure And Reactivity Of Human Mitochondrial 2, 4-Dienoyl-Coa Reductase: Enzyme-Ligand Interactions In A Distinctive Short-Chain Reductase Active Site
J. Biol. Chem. V. 280 3068 2005
[
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: HEXANOYL-COENZYME A (HXCa)
1b: HEXANOYL-COENZYME A (HXCb)
1c: HEXANOYL-COENZYME A (HXCc)
1d: HEXANOYL-COENZYME A (HXCd)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
2d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HXC
4
Ligand/Ion
HEXANOYL-COENZYME A
2
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:119 , ALA A:146 , GLY A:147 , ASN A:148 , PHE A:149 , SER A:157 , ASN A:159 , THR A:163 , THR A:197 , TYR A:199 , SER A:210 , NAP A:1329 , HOH A:2075 , HOH A:2132 , HOH A:2134 , HOH A:2137 , GLU D:326
BINDING SITE FOR RESIDUE HXC A1330
2
AC2
SOFTWARE
ARG B:91 , ARG B:119 , GLY B:147 , ASN B:148 , PHE B:149 , SER B:157 , ASN B:159 , ALA B:160 , TYR B:199 , NAP B:1330 , HOH B:2069 , HOH B:2147 , HOH B:2148 , GLU C:326 , HOH C:2126
BINDING SITE FOR RESIDUE HXC B1331
3
AC3
SOFTWARE
GLU B:310 , GLU B:326 , ALA C:146 , GLY C:147 , ASN C:148 , PHE C:149 , SER C:157 , ASN C:159 , THR C:163 , THR C:197 , TYR C:199 , NAP C:1329 , HOH C:2047 , HOH C:2079 , HOH C:2128 , HOH C:2130 , HOH C:2131
BINDING SITE FOR RESIDUE HXC C1330
4
AC4
SOFTWARE
GLU A:326 , ARG D:91 , ALA D:146 , GLY D:147 , ASN D:148 , PHE D:149 , SER D:157 , ASN D:159 , THR D:163 , ILE D:164 , LYS D:214 , NAP D:1328 , HOH D:2161 , HOH D:2162
BINDING SITE FOR RESIDUE HXC D1329
5
AC5
SOFTWARE
GLY A:66 , THR A:69 , GLY A:70 , LEU A:71 , SER A:90 , ARG A:91 , LYS A:92 , CYS A:116 , ASP A:117 , VAL A:118 , ASN A:144 , ALA A:145 , ALA A:146 , ILE A:195 , THR A:196 , LYS A:214 , PRO A:240 , GLY A:241 , PRO A:242 , ILE A:243 , HXC A:1330 , HOH A:2129 , HOH A:2130 , HOH A:2131 , HOH A:2132
BINDING SITE FOR RESIDUE NAP A1329
6
AC6
SOFTWARE
GLY B:66 , THR B:69 , GLY B:70 , LEU B:71 , SER B:90 , ARG B:91 , LYS B:92 , CYS B:116 , ASP B:117 , VAL B:118 , ARG B:119 , ASN B:144 , ALA B:145 , ALA B:146 , ILE B:167 , ILE B:195 , THR B:196 , LYS B:214 , PRO B:240 , GLY B:241 , PRO B:242 , ILE B:243 , HXC B:1331 , HOH B:2060 , HOH B:2144 , HOH B:2146
BINDING SITE FOR RESIDUE NAP B1330
7
AC7
SOFTWARE
GLY C:66 , THR C:69 , GLY C:70 , LEU C:71 , SER C:90 , ARG C:91 , LYS C:92 , CYS C:116 , ASP C:117 , VAL C:118 , ASN C:144 , ALA C:145 , ALA C:146 , ILE C:195 , THR C:196 , LYS C:214 , PRO C:240 , GLY C:241 , PRO C:242 , ILE C:243 , THR C:245 , HXC C:1330 , HOH C:2009 , HOH C:2010 , HOH C:2127 , HOH C:2128 , HOH C:2129
BINDING SITE FOR RESIDUE NAP C1329
8
AC8
SOFTWARE
GLY D:66 , THR D:69 , GLY D:70 , LEU D:71 , SER D:90 , ARG D:91 , LYS D:92 , CYS D:116 , ASP D:117 , VAL D:118 , ASN D:144 , ALA D:145 , ALA D:146 , ILE D:195 , THR D:196 , LYS D:214 , PRO D:240 , GLY D:241 , PRO D:242 , ILE D:243 , HXC D:1329 , HOH D:2033 , HOH D:2156 , HOH D:2157 , HOH D:2158 , HOH D:2159
BINDING SITE FOR RESIDUE NAP D1328
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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]
Exons
(9, 36)
Info
All Exons
Exon 1.6b (A:35-91 | B:34-91 | C:36-91 | D:34...)
Exon 1.7c (A:91-110 | B:91-110 | C:91-110 | D...)
Exon 1.8 (A:111-139 | B:111-139 | C:111-139 ...)
Exon 1.9b (A:140-189 | B:140-189 | C:140-189 ...)
Exon 1.12e (A:189-222 | B:189-222 | C:189-222 ...)
Exon 1.13c (A:222-245 | B:222-245 | C:222-245 ...)
Exon 1.14b (A:252-295 | B:256-295 | C:247-295 ...)
Exon 1.16 (A:296-316 | B:296-316 | C:296-316 ...)
Exon 1.17f (A:317-328 | B:317-329 | C:317-328 ...)
View:
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All Exon Boundaries
01: Boundary 1.1a/1.6b
02: Boundary 1.6b/1.7c
03: Boundary 1.7c/1.8
04: Boundary 1.8/1.9b
05: Boundary 1.9b/1.12e
06: Boundary 1.12e/1.13c
07: Boundary 1.13c/1.14b
08: Boundary 1.14b/1.16
09: Boundary 1.16/1.17f
10: Boundary 1.17f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000220764
1a
ENSE00001087833
chr8:
91013633-91013789
157
DECR_HUMAN
1-23
23
0
-
-
1.6b
ENST00000220764
6b
ENSE00001154275
chr8:
91029352-91029554
203
DECR_HUMAN
24-91
68
4
A:35-91
B:34-91
C:36-91
D:34-91
57
58
56
58
1.7c
ENST00000220764
7c
ENSE00001087854
chr8:
91031137-91031194
58
DECR_HUMAN
91-110
20
4
A:91-110
B:91-110
C:91-110
D:91-110
20
20
20
20
1.8
ENST00000220764
8
ENSE00001087852
chr8:
91031314-91031400
87
DECR_HUMAN
111-139
29
4
A:111-139
B:111-139
C:111-139
D:111-139
29
29
29
29
1.9b
ENST00000220764
9b
ENSE00001087839
chr8:
91033137-91033284
148
DECR_HUMAN
140-189
50
4
A:140-189
B:140-189
C:140-189
D:140-189
50
50
50
50
1.12e
ENST00000220764
12e
ENSE00001087830
chr8:
91049069-91049168
100
DECR_HUMAN
189-222
34
4
A:189-222
B:189-222
C:189-222
D:189-222
34
34
34
34
1.13c
ENST00000220764
13c
ENSE00001087848
chr8:
91054956-91055028
73
DECR_HUMAN
222-246
25
4
A:222-245
B:222-245
C:222-245
D:222-245
24
24
24
24
1.14b
ENST00000220764
14b
ENSE00001087836
chr8:
91057077-91057223
147
DECR_HUMAN
247-295
49
4
A:252-295
B:256-295
C:247-295 (gaps)
D:258-295
44
40
49
38
1.16
ENST00000220764
16
ENSE00001087828
chr8:
91063905-91063967
63
DECR_HUMAN
296-316
21
4
A:296-316
B:296-316
C:296-316
D:296-316
21
21
21
21
1.17f
ENST00000220764
17f
ENSE00002128622
chr8:
91064066-91064236
171
DECR_HUMAN
317-335
19
4
A:317-328
B:317-329
C:317-328
D:317-327
12
13
12
11
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1w6ua_ (A:)
1b: SCOP_d1w6ub_ (B:)
1c: SCOP_d1w6uc_ (C:)
1d: SCOP_d1w6ud_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
2,4-dienoyl-CoA reductase, mitochondrial (DECR)
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1w6ua_
A:
1b
d1w6ub_
B:
1c
d1w6uc_
C:
1d
d1w6ud_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_adh_short_C2_1w6uD01 (D:66-304)
1b: PFAM_adh_short_C2_1w6uD02 (D:66-304)
1c: PFAM_adh_short_C2_1w6uD03 (D:66-304)
1d: PFAM_adh_short_C2_1w6uD04 (D:66-304)
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Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short_C2
(98)
Homo sapiens (Human)
(7)
1a
adh_short_C2-1w6uD01
D:66-304
1b
adh_short_C2-1w6uD02
D:66-304
1c
adh_short_C2-1w6uD03
D:66-304
1d
adh_short_C2-1w6uD04
D:66-304
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Asymmetric Unit 1
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