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1W6M
Asym. Unit
Info
Asym.Unit (52 KB)
Biol.Unit 1 (47 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF C2S HUMAN GALECTIN-1 COMPLEXED WITH GALACTOSE
Authors
:
M. I. F. Lopez-Lucendo, H. J. Gabius, A. Romero
Date
:
19 Aug 04 (Deposition) - 20 Oct 04 (Release) - 05 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Sugar Binding Protein, Lectin, Carbohydrate-Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. I. F. Lopez-Lucendo, D. Solis, S. Andre, J. Hirabayashi, K. Kasai, H. Kaltner, H. J. Gabius, A. Romero
Growth-Regulatory Human Galectin-1: Crystallographic Characterisation Of The Structural Changes Induced By Single-Site Mutations And Their Impact On The Thermodynamic Of Ligand Binding.
J. Mol. Biol. V. 343 957 2004
[
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
1c: BETA-MERCAPTOETHANOL (BMEc)
1d: BETA-MERCAPTOETHANOL (BMEd)
1e: BETA-MERCAPTOETHANOL (BMEe)
2a: S-HYDROXYCYSTEINE (CSOa)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
5
Ligand/Ion
BETA-MERCAPTOETHANOL
2
CSO
1
Mod. Amino Acid
S-HYDROXYCYSTEINE
3
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
4
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:1044 , ASN A:1046 , ARG A:1048 , HIS A:1052 , ASN A:1061 , GLU A:1071 , HOH A:2052
BINDING SITE FOR RESIDUE GAL A 4000
2
AC2
SOFTWARE
HIS B:2044 , ARG B:2048 , ASN B:2061 , TRP B:2068 , GLU B:2071 , HOH B:5077 , HOH B:5079
BINDING SITE FOR RESIDUE GAL B 4000
3
AC3
SOFTWARE
PRO A:1109 , ARG A:1111 , ARG B:2018 , LYS B:2099 , BME B:3135
BINDING SITE FOR RESIDUE SO4 A 2137
4
AC4
SOFTWARE
ASP A:1092 , ALA A:1094 , ASN A:1095 , LYS A:1107 , HOH A:2038
BINDING SITE FOR RESIDUE SO4 A 2138
5
AC5
SOFTWARE
ARG A:1018 , GLU A:1086 , CYS A:1088 , LYS A:1099
BINDING SITE FOR RESIDUE BME A 2135
6
AC6
SOFTWARE
CYS A:1130 , VAL A:1131
BINDING SITE FOR RESIDUE BME A 2136
7
AC7
SOFTWARE
SO4 A:2137 , CYS B:2016 , ILE B:2089
BINDING SITE FOR RESIDUE BME B 3135
8
AC8
SOFTWARE
ARG B:2018 , GLU B:2086 , CYS B:2088 , LYS B:2099 , LEU B:2100 , HOH B:5076
BINDING SITE FOR RESIDUE BME B 3136
9
AC9
SOFTWARE
ARG B:2020 , GLU B:2086 , CYS B:2130 , VAL B:2131
BINDING SITE FOR RESIDUE BME B 3137
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GALECTIN (A:1003-1134,B:2003-2134)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GALECTIN
PS51304
Galactoside-binding lectin (galectin) domain profile.
LEG1_HUMAN
4-135
2
A:1003-1134
B:2003-2134
[
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]
Exons
(4, 8)
Info
All Exons
Exon 1.1a (A:1001-1002 | B:2001-2002)
Exon 1.3b (A:1003-1029 | B:2003-2029)
Exon 1.5c (A:1029-1086 | B:2029-2086)
Exon 1.6c (A:1087-1134 | B:2087-2134)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3b
3: Boundary 1.3b/1.5c
4: Boundary 1.5c/1.6c
5: Boundary 1.6c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000215909
1a
ENSE00001045616
chr22:
38071615-38071718
104
LEG1_HUMAN
1-3
3
2
A:1001-1002
B:2001-2002
2
2
1.3b
ENST00000215909
3b
ENSE00001258442
chr22:
38072993-38073072
80
LEG1_HUMAN
4-30
27
2
A:1003-1029
B:2003-2029
27
27
1.5c
ENST00000215909
5c
ENSE00001746974
chr22:
38074490-38074661
172
LEG1_HUMAN
30-87
58
2
A:1029-1086
B:2029-2086
58
58
1.6c
ENST00000215909
6c
ENSE00001173615
chr22:
38075610-38075813
204
LEG1_HUMAN
88-135
48
2
A:1087-1134
B:2087-2134
48
48
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1w6ma_ (A:)
1b: SCOP_d1w6mb_ (B:)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Galectin (animal S-lectin)
(75)
Protein domain
:
Galectin-1
(22)
Human (Homo sapiens) [TaxId: 9606]
(13)
1a
d1w6ma_
A:
1b
d1w6mb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1w6mB00 (B:2001-2134)
1b: CATH_1w6mA00 (A:1001-1134)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Human (Homo sapiens)
(49)
1a
1w6mB00
B:2001-2134
1b
1w6mA00
A:1001-1134
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Gal_bind_lectin_1w6mB01 (B:2003-2133)
1b: PFAM_Gal_bind_lectin_1w6mB02 (B:2003-2133)
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Clan
:
Concanavalin
(293)
Family
:
Gal-bind_lectin
(60)
Homo sapiens (Human)
(25)
1a
Gal-bind_lectin-1w6mB01
B:2003-2133
1b
Gal-bind_lectin-1w6mB02
B:2003-2133
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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